RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA876641" and tax_phylum = "Placozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Placozoa · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA876641 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8506019 8506019 PRJNA876641_P_NODE_14447_length_257_cov_1.652174_g14373_i0 PRJNA876641 14447 257 1.652174 4.24608718 Trichoplax adhaerens 10228 Placozoa other_Eukaryota 89.8 1.78e-13   NTclustered gi|196000417|ref|XM_002110041.1| 10228 g14373 i0 100 0.350194552529183 48 0 35 0 210 257 542 495 Trichoplax adhaerens uncharacterized protein (TRIADDRAFT_20411), partial mRNA blastn 90 89.8 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
11056957 11056957 PRJNA876641_P_NODE_2449_length_452_cov_19.992084_g2375_i0 PRJNA876641 2449 452 19.992084 90.36421968 Trichoplax adhaerens 10228 Placozoa other_Eukaryota 137 1.18e-27   NTclustered gi|196002220|ref|XM_002110942.1| 10228 g2375 i0 100 13.5265486725664 74 0 16 0 348 421 96 169 Trichoplax adhaerens uncharacterized protein (TRIADDRAFT_22994), partial mRNA blastn 6114 137 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
19979765 19979765 PRJNA876641_P_NODE_13476_length_262_cov_2.142857_g13402_i0 PRJNA876641 13476 262 2.142857 5.61428534 Trichoplax adhaerens 10228 Placozoa other_Eukaryota 110 7.16e-26   NR XP_002107754.1 10228 g13402 i0 54 2.85114503816794 87 40 99.6 0 2 262 294 380 XP_002107754.1 expressed hypothetical protein [Trichoplax adhaerens] diamond 747 110 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
25079233 25079233 PRJNA876641_P_NODE_180_length_1238_cov_10.817167_g145_i0 PRJNA876641 180 1238 10.817167 133.91652746 Trichoplax adhaerens 10228 Placozoa other_Eukaryota 429 5e-115   NTclustered gi|196005798|ref|XM_002112730.1| 10228 g145 i0 99.16 5.23101777059774 238 2 35 0 887 1124 1000 763 Trichoplax adhaerens uncharacterized protein (TRIADDRAFT_56242), partial mRNA blastn 6476 429 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
28823451 28823451 PRJNA876641_P_NODE_19768_length_246_cov_0.890173_g19694_i0 PRJNA876641 19768 246 0.890173 2.18982558 Trichoplax adhaerens 10228 Placozoa other_Eukaryota 98.6 8.61e-22   NR XP_002107896.1 10228 g19694 i0 51.2 4.86585365853659 82 39 98.8 1 3 245 304 385 XP_002107896.1 uncharacterized protein TRIADDRAFT_36957 [Trichoplax adhaerens] diamond 1197 98.6 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
29770801 29770801 PRJNA876641_P_NODE_14871_length_255_cov_1.329670_g14797_i0 PRJNA876641 14871 255 1.32967 3.3906585 Trichoplax sp. H2 287889 Placozoa other_Eukaryota 79.7 1.87e-16   NR RDD40381.1 287889 g14797 i0 68.4 3.08235294117647 57 18 67.1 0 1 171 105 161 RDD40381.1 40S ribosomal protein S15 [Trichoplax sp. H2] diamond 786 79.7 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax sp. H2
29834113 29834113 PRJNA876641_P_NODE_18671_length_247_cov_1.160920_g18597_i0 PRJNA876641 18671 247 1.16092 2.8674724 Trichoplax sp. H2 287889 Placozoa other_Eukaryota 72.8 8.56e-13   NR RDD38000.1 287889 g18597 i0 45.7 8.8421052631579 81 40 98.4 1 4 246 100 176 RDD38000.1 Tryptophan--tRNA ligase, mitochondrial [Trichoplax sp. H2] diamond 2184 72.8 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax sp. H2
31761961 31761961 PRJNA876641_P_NODE_10277_length_280_cov_2.057971_g10203_i0 PRJNA876641 10277 280 2.057971 5.7623188 Trichoplax adhaerens 10228 Placozoa other_Eukaryota 60.5 5.35e-9   NR XP_002113429.1 10228 g10203 i0 65.2 2.025 46 16 49.3 0 271 134 108 153 XP_002113429.1 uncharacterized protein TRIADDRAFT_27257 [Trichoplax adhaerens] diamond 567 60.5 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
32308220 32308220 PRJNA876641_P_NODE_11839_length_271_cov_2.181818_g11765_i0 PRJNA876641 11839 271 2.181818 5.91272678 Trichoplax 10227 Placozoa other_Eukaryota 82 1.69e-17   NR XP_002109141.1 10228 g11765 i0 51.1 1.99261992619926 90 44 99.6 0 1 270 39 128 XP_002109141.1 uncharacterized protein TRIADDRAFT_20666, partial [Trichoplax adhaerens] diamond 540 82 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
32584739 32584739 PRJNA876641_P_NODE_14759_length_255_cov_1.912088_g14685_i0 PRJNA876641 14759 255 1.912088 4.8758244 Trichoplax sp. H2 287889 Placozoa other_Eukaryota 53.9 4.87e-6   NR RDD36432.1 287889 g14685 i0 47.8 1.08235294117647 46 23 54.1 1 5 142 158 202 RDD36432.1 Fibrillin-1, partial [Trichoplax sp. H2] diamond 276 53.9 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax sp. H2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;