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contig_metadata

30 rows where bioproject = "PRJNA876641", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 30 ✖

tax_phylum 1

  • Bdellovibrionota · 30 ✖

tax_kingdom 1

bioproject 1

  • PRJNA876641 · 30 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
853132 853132 PRJNA876641_P_NODE_13381_length_263_cov_1.436842_g13307_i0 PRJNA876641 13381 263 1.436842 3.77889446 Peredibacter starrii 28202 Bacteria Bacteria 475 1.2e-129   NTclustered gi|2631252187|gb|CP139487.1| 28202 g13307 i0 99.24 211.539923954373 263 2 100 0 1 263 511585 511847 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 55635 475 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
853298 853298 PRJNA876641_P_NODE_24061_length_228_cov_4.509677_g23987_i0 PRJNA876641 24061 228 4.509677 10.28206356 Peredibacter starrii 28202 Bacteria Bacteria 387 4.91e-103   NTclustered gi|2631252187|gb|CP139487.1| 28202 g23987 i0 97.368 20.5570175438597 228 5 100 1 1 228 512370 512144 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 4687 387 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
8506012 8506012 PRJNA876641_P_NODE_13687_length_261_cov_1.638298_g13613_i0 PRJNA876641 13687 261 1.638298 4.27595778 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 171 6.3e-38   NTclustered gi|2313021230|gb|CP102930.1| 959 g13613 i0 91.27 113.59386973180099 126 9 48 2 2 125 2386643 2386518 Bdellovibrio bacteriovorus strain kdesi chromosome, complete genome blastn 29648 171 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
16155784 16155784 PRJNA876641_P_NODE_133_length_1366_cov_2.044857_g110_i0 PRJNA876641 133 1366 2.044857 27.93274662 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 627 3.4e-222   NR MCB0368368.1 2053517 g110 i0 85.6 5.76720351390922 361 50 79.3 1 1363 281 82 440 MCB0368368.1 hypothetical protein [Bdellovibrionales bacterium] diamond 7878 627 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
16155821 16155821 PRJNA876641_P_NODE_15313_length_252_cov_2.134078_g15239_i0 PRJNA876641 15313 252 2.134078 5.37787656 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 158 4.71e-34   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g15239 i0 95.876 0.384920634920635 97 4 38 0 101 197 2775205 2775301 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 97 158 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
23805346 23805346 PRJNA876641_P_NODE_18219_length_248_cov_0.880000_g18145_i0 PRJNA876641 18219 248 0.88 2.1824 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 363 9.119999999999997e-96   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g18145 i0 92.885 108.120967741935 253 12 100 5 1 248 3450450 3450199 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 26814 363 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
26643586 26643586 PRJNA876641_P_NODE_5661_length_337_cov_0.856061_g5587_i0 PRJNA876641 5661 337 0.856061 2.88492557 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 43.5 0.0414   NR MCB0368971.1 2053517 g5587 i0 58.1 0.551928783382789 62 26 55.2 0 15 200 73 134 MCB0368971.1 hypothetical protein [Bdellovibrionales bacterium] diamond 186 43.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
26991751 26991751 PRJNA876641_P_NODE_13362_length_263_cov_1.505263_g13288_i0 PRJNA876641 13362 263 1.505263 3.95884169 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 110 1.52e-29   NR MCB0369232.1 2053517 g13288 i0 65.8 0.832699619771863 73 24 83.3 1 260 42 10 81 MCB0369232.1 hypothetical protein [Bdellovibrionales bacterium] diamond 219 110 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27086937 27086937 PRJNA876641_P_NODE_18902_length_247_cov_0.885057_g18828_i0 PRJNA876641 18902 247 0.885057 2.18609079 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 60.5 9.26e-9   NR MCB0368971.1 2053517 g18828 i0 45.1 0.862348178137652 71 38 86.2 1 35 247 21 90 MCB0368971.1 hypothetical protein [Bdellovibrionales bacterium] diamond 213 60.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27118238 27118238 PRJNA876641_P_NODE_23582_length_241_cov_0.916667_g23508_i0 PRJNA876641 23582 241 0.916667 2.20916747 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 45.8 0.00286   NR MBY0413140.1 2053517 g23508 i0 39.2 2.06639004149378 51 31 63.5 0 153 1 175 225 MBY0413140.1 fatty acid desaturase [Bdellovibrionales bacterium] diamond 498 45.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27149631 27149631 PRJNA876641_P_NODE_19402_length_246_cov_0.890173_g19328_i0 PRJNA876641 19402 246 0.890173 2.18982558 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 101 3.3200000000000004e-26   NR MCB0371090.1 2053517 g19328 i0 98.1 0.634146341463415 52 1 63.4 0 245 90 20 71 MCB0371090.1 hypothetical protein [Bdellovibrionales bacterium] diamond 156 101 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27149634 27149634 PRJNA876641_P_NODE_22642_length_242_cov_0.911243_g22568_i0 PRJNA876641 22642 242 0.911243 2.20520806 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 142 2.809999999999999e-38   NR MBL7554562.1 2026715 g22568 i0 89.9 0.979338842975207 79 8 97.9 0 2 238 243 321 MBL7554562.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 237 142 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
28065922 28065922 PRJNA876641_P_NODE_1725_length_521_cov_3.883929_g1651_i0 PRJNA876641 1725 521 3.883929 20.23527009 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 266 1.07e-88   NR MCB0370127.1 2053517 g1651 i0 92.4 0.829174664107486 144 11 82.9 0 452 21 27 170 MCB0370127.1 40S ribosomal protein S14 [Bdellovibrionales bacterium] diamond 432 266 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28065931 28065931 PRJNA876641_P_NODE_5085_length_350_cov_0.833935_g5011_i0 PRJNA876641 5085 350 0.833935 2.9187725 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 221 1.04e-71   NR MCB0369646.1 2053517 g5011 i0 91.4 0.994285714285714 116 10 99.4 0 3 350 35 150 MCB0369646.1 50S ribosomal protein L22 [Bdellovibrionales bacterium] diamond 348 221 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28223663 28223663 PRJNA876641_P_NODE_14366_length_257_cov_3.347826_g14292_i0 PRJNA876641 14366 257 3.347826 8.60391282 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 108 8.1e-29   NR MCB0369232.1 2053517 g14292 i0 57.9 0.88715953307393 76 31 88.7 1 255 28 7 81 MCB0369232.1 hypothetical protein [Bdellovibrionales bacterium] diamond 228 108 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28318498 28318498 PRJNA876641_P_NODE_11546_length_273_cov_1.925000_g11472_i0 PRJNA876641 11546 273 1.925 5.25525 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 99.8 1.13e-22   NR MFP5386349.1 3058048 g11472 i0 87.5 0.615384615384615 56 7 61.5 0 105 272 1 56 MFP5386349.1 hypothetical protein [Bacteriovoracia bacterium] diamond 168 99.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
28602837 28602837 PRJNA876641_P_NODE_15847_length_251_cov_0.865169_g15773_i0 PRJNA876641 15847 251 0.865169 2.17157419 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 42 0.0118   NR MBP9675017.1 2081706 g15773 i0 33.9 0.705179282868526 59 39 70.5 0 249 73 17 75 MBP9675017.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 177 42 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
28697631 28697631 PRJNA876641_P_NODE_22487_length_242_cov_0.911243_g22413_i0 PRJNA876641 22487 242 0.911243 2.20520806 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 97.1 1.83e-24   NR MCB0369354.1 2053517 g22413 i0 85.4 0.59504132231405 48 7 59.5 0 149 6 1 48 MCB0369354.1 hypothetical protein [Bdellovibrionales bacterium] diamond 144 97.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29116089 29116089 PRJNA876641_P_NODE_10968_length_277_cov_0.941176_g10894_i0 PRJNA876641 10968 277 0.941176 2.60705752 Bacteria 2 Bacteria Bacteria 73.6 8.23e-13   NR OFZ30667.1 1797389 g10894 i0 39.6 3.87725631768953 91 47 98.6 1 276 4 683 765 OFZ30667.1 MAG: hypothetical protein A2622_13435 [Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29] diamond 1074 73.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29
29139720 29139720 PRJNA876641_P_NODE_13209_length_264_cov_1.397906_g13135_i0 PRJNA876641 13209 264 1.397906 3.69047184 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 123 5.839999999999999e-31   NR MSP19101.1 2053517 g13135 i0 64 1.95454545454545 86 31 97.7 0 262 5 113 198 MSP19101.1 aldehyde dehydrogenase family protein [Bdellovibrionales bacterium] diamond 516 123 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29392183 29392183 PRJNA876641_P_NODE_8589_length_290_cov_1.364055_g8515_i0 PRJNA876641 8589 290 1.364055 3.9557595 Peredibacter starrii 28202 Bacteria Bacteria 164 1.4e-48   NR WP_321390812.1 28202 g8515 i0 82.3 0.993103448275862 96 17 99.3 0 290 3 2 97 WP_321390812.1 xanthine dehydrogenase accessory protein XdhC [Peredibacter starrii] diamond 288 164 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
29612746 29612746 PRJNA876641_P_NODE_7310_length_309_cov_1.207627_g7236_i0 PRJNA876641 7310 309 1.207627 3.73156743 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 157 2.68e-46   NR MBX9767865.1 2053517 g7236 i0 71.3 0.980582524271845 101 29 98.1 0 2 304 70 170 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 303 157 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29620682 29620682 PRJNA876641_P_NODE_15290_length_252_cov_2.525140_g15216_i0 PRJNA876641 15290 252 2.52514 6.3633528 Bdellovibrionota 3018035 Bacteria Bacteria 57 4.15e-7   NR OFZ81938.1 1797404 g15216 i0 46.2 3.82142857142857 65 34 77.4 1 4 198 1596 1659 OFZ81938.1 MAG: hypothetical protein A2603_04280 [Bdellovibrionales bacterium RIFOXYD1_FULL_55_31] diamond 963 57.4 0.993031358885017 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYD1_FULL_55_31
29675918 29675918 PRJNA876641_P_NODE_630_length_769_cov_2.219828_g564_i0 PRJNA876641 630 769 2.219828 17.07047732 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 322 9.39e-109   NR MBX9767865.1 2053517 g564 i0 89.7 0.682704811443433 175 18 68.3 0 526 2 1 175 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 525 322 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29770799 29770799 PRJNA876641_P_NODE_11371_length_274_cov_1.796020_g11297_i0 PRJNA876641 11371 274 1.79602 4.9210948 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 129 1.07e-33   NR HLW57180.1 2081706 g11297 i0 72.5 0.996350364963504 91 25 99.6 0 273 1 204 294 HLW57180.1 glycosyltransferase family 4 protein [Bacteriovoracaceae bacterium] diamond 273 129 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32300236 32300236 PRJNA876641_P_NODE_23899_length_233_cov_2.962500_g23825_i0 PRJNA876641 23899 233 2.9625 6.902625 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 130 1.16e-37   NR MCB0370163.1 2053517 g23825 i0 93.9 1.82832618025751 66 4 85 0 233 36 4 69 MCB0370163.1 hypothetical protein [Bdellovibrionales bacterium] diamond 426 130 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32308224 32308224 PRJNA876641_P_NODE_23679_length_239_cov_2.969880_g23605_i0 PRJNA876641 23679 239 2.96988 7.0980132 Bdellovibrio 958 Bacteria Bacteria 156 1.0899999999999999e-43   NR OYZ20711.1 1970323 g23605 i0 97.5 1.98326359832636 79 2 99.2 0 2 238 47 125 OYZ20711.1 MAG: tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB [Bdellovibrio sp. 28-41-41] diamond 474 156 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. 28-41-41
32426494 32426494 PRJNA876641_P_NODE_8679_length_289_cov_2.620370_g8605_i0 PRJNA876641 8679 289 2.62037 7.5728693 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 169 1.09e-51   NR MCB0369869.1 2053517 g8605 i0 84.4 0.996539792387543 96 15 99.7 0 289 2 3 98 MCB0369869.1 uL15 family ribosomal protein [Bdellovibrionales bacterium] diamond 288 169 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32521663 32521663 PRJNA876641_P_NODE_14479_length_257_cov_1.489130_g14405_i0 PRJNA876641 14479 257 1.48913 3.8270641 Bacteriovorax sp. MedPE-SWde 1860085 Bacteria Bacteria 93.6 1.69e-20   NR OIQ15932.1 1860085 g14405 i0 47.5 4.63424124513619 80 42 93.4 0 1 240 233 312 OIQ15932.1 MAG: lipoate--protein ligase [Bacteriovorax sp. MedPE-SWde] diamond 1191 93.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. MedPE-SWde
32773346 32773346 PRJNA876641_P_NODE_18360_length_248_cov_0.880000_g18286_i0 PRJNA876641 18360 248 0.88 2.1824 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 68.9 1.87e-11   NR PZO87517.1 349221 g18286 i0 43.2 0.895161290322581 74 40 89.5 1 245 24 246 317 PZO87517.1 MAG: hydroxyacid dehydrogenase [Micavibrio aeruginosavorus] diamond 222 68.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;