RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA876641", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA876641 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27339854 27339854 PRJNA876641_P_NODE_12023_length_270_cov_2.091371_g11949_i0 PRJNA876641 12023 270 2.091371 5.6467017 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 139 3.23e-36   NR MFT5207019.1 2035772 g11949 i0 70.5 0.977777777777778 88 26 97.8 0 264 1 494 581 MFT5207019.1 pentatricopeptide repeat protein [Candidatus Omnitrophota bacterium] diamond 264 139 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28413358 28413358 PRJNA876641_P_NODE_21786_length_243_cov_0.905882_g21712_i0 PRJNA876641 21786 243 0.905882 2.20129326 Omnitrophica WOR_2 bacterium RIFCSPLOWO2_12_FULL_5 2035772 Bacteria Bacteria 114 9.26e-28   NR OGX42737.1 1801868 g21712 i0 70 1.97530864197531 80 24 98.8 0 242 3 382 461 OGX42737.1 MAG: fumarate hydratase, class II [Omnitrophica WOR_2 bacterium RIFCSPLOWO2_12_FULL_50_9] diamond 480 114 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica WOR_2 bacterium RIFCSPLOWO2_12_FULL_50_9
29936987 29936987 PRJNA876641_P_NODE_23771_length_237_cov_2.347561_g23697_i0 PRJNA876641 23771 237 2.347561 5.56371957 Pseudomonadati 3379134 Bacteria Bacteria 58.9 6.62e-8   NR HLF17539.1 2035772 g23697 i0 42.9 6.67088607594937 70 35 86.1 2 235 32 28 94 HLF17539.1 ATP-binding protein [Candidatus Omnitrophota bacterium] diamond 1581 59.3 0.993254637436762 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;