RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA876641", tax_clade = "Methanomada group" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA876641 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30348152 30348152 PRJNA876641_P_NODE_14172_length_259_cov_0.876344_g14098_i0 PRJNA876641 14172 259 0.876344 2.26973096 root 1 Root_unresolved Root_unresolved 48.1 5.53e-4   NR WP_295594825.1 253161 g14098 i0 26.8 9.71814671814672 82 55 95 2 253 8 52 128 WP_295594825.1 PQQ-binding-like beta-propeller repeat protein [uncultured Methanobrevibacter sp.] diamond 2517 48.5 0.991752577319588 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
32899268 32899268 PRJNA876641_P_NODE_7400_length_307_cov_1.974359_g7326_i0 PRJNA876641 7400 307 1.974359 6.06128213 Methanopyrus 2319 Archaea Archaea 45.1 9.26e-4   NR WP_011019823.1 2319 g7326 i0 46.7 0.781758957654723 45 23 43 1 242 111 16 60 WP_011019823.1 MULTISPECIES: 30S ribosomal protein S27ae [Methanopyrus] diamond 240 45.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanopyri Methanopyrales Methanopyraceae Methanopyrus  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;