RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA876641", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA876641 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29021587 29021587 PRJNA876641_P_NODE_22188_length_242_cov_1.804734_g22114_i0 PRJNA876641 22188 242 1.804734 4.36745628 root 1 Root_unresolved Root_unresolved 48.9 2.47e-4   NR XP_001330142.1 412133 g22114 i0 31.3 1.99586776859504 80 53 96.7 1 236 3 77 156 XP_001330142.1 antigen BSP-related family [Trichomonas vaginalis G3] diamond 483 48.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29202765 29202765 PRJNA876641_P_NODE_23849_length_235_cov_2.098765_g23775_i0 PRJNA876641 23849 235 2.098765 4.93209775 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 50.8 4.28e-5   NR XP_067769857.1 135588 g23775 i0 36 2.59148936170213 75 48 95.7 0 2 226 155 229 XP_067769857.1 ZIP Zinc transporter family protein [Histomonas meleagridis] diamond 609 50.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32804905 32804905 PRJNA876641_P_NODE_8880_length_288_cov_1.795349_g8806_i0 PRJNA876641 8880 288 1.795349 5.17060512 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 47.8 8.82e-4   NR XP_068364270.1 1144522 g8806 i0 36.4 1.03125 99 39 78.1 3 64 288 27 125 XP_068364270.1 14-3-3 protein [Tritrichomonas foetus] diamond 297 47.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;