RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA874604" and tax_phylum = "Synergistota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA874604 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14880503 14880503 PRJNA874604_P_NODE_74832_length_249_cov_0.875000_g74480_i0 PRJNA874604 74832 249 0.875 2.17875 Fretibacterium fastidiosum 651822 Bacteria Bacteria 195 3.5399999999999996e-45   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g74480 i0 81.008 2.39357429718876 258 37 100 7 1 249 550151 550405 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 596 195 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
17430832 17430832 PRJNA874604_P_NODE_81894_length_247_cov_0.885057_g81542_i0 PRJNA874604 81894 247 0.885057 2.18609079 Cloacibacillus porcorum 1197717 Bacteria Bacteria 457 4.05e-124   NTclustered gi|1050315908|gb|CP016757.1| 1197717 g81542 i0 100 1 247 0 100 0 1 247 1094983 1095229 Cloacibacillus porcorum strain CL-84 chromosome, complete genome blastn 247 457 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Cloacibacillus Cloacibacillus porcorum
32616011 32616011 PRJNA874604_P_NODE_55040_length_275_cov_1.252475_g54688_i0 PRJNA874604 55040 275 1.252475 3.44430625 Synergistales bacterium 2268201 Bacteria Bacteria 99.4 1.5199999999999995e-23   NR MFA0888825.1 2268201 g54688 i0 70.3 4.88727272727273 64 19 69.8 0 197 6 1 64 MFA0888825.1 NAD(P)H:quinone oxidoreductase [Synergistales bacterium] diamond 1344 99.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales     Synergistales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;