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contig_metadata

34 rows where bioproject = "PRJNA874604", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 34 ✖

tax_kingdom 1

  • Pseudomonadati · 34 ✖

bioproject 1

  • PRJNA874604 · 34 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3402520 3402520 PRJNA874604_P_NODE_38243_length_314_cov_2.655602_g37891_i0 PRJNA874604 38243 314 2.655602 8.33859028 Peredibacter starrii 28202 Bacteria Bacteria 536 6.649999999999999e-148   NTclustered gi|2631252187|gb|CP139487.1| 28202 g37891 i0 97.452 57.4872611464968 314 8 100 0 1 314 512329 512016 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 18051 536 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
8891332 8891332 PRJNA874604_P_NODE_95187_length_242_cov_1.384615_g94835_i0 PRJNA874604 95187 242 1.384615 3.3507683 Bacteriovorax 146784 Bacteria Bacteria 409 1.12e-109   NTclustered gi|1700689994|gb|CP030035.1| 960 g94835 i0 97.107 203.206611570248 242 7 100 0 1 242 1660773 1660532 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 49176 409 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
16154447 16154447 PRJNA874604_P_NODE_37373_length_317_cov_1.635246_g37021_i0 PRJNA874604 37373 317 1.635246 5.18372982 Pigmentibacter 2838409 Bacteria Bacteria 86.7 3.38e-17   NR WP_158998944.1 2683196 g37021 i0 43 4.0410094637224 107 59 99.4 1 317 3 427 533 WP_158998944.1 ATP-dependent zinc metalloprotease FtsH [Pigmentibacter ruber] diamond 1281 87.4 0.991990846681922 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Pigmentibacter Pigmentibacter ruber
16155461 16155461 PRJNA874604_P_NODE_87833_length_245_cov_0.895349_g87481_i0 PRJNA874604 87833 245 0.895349 2.19360505 Bacteriovorax sp. HI3 2984118 Bacteria Bacteria 259 1.21e-64   NTclustered gi|2321225508|dbj|AP026946.1| 2984118 g87481 i0 85.772 3.01224489795918 246 33 100 2 1 245 2106095 2105851 Bacteriovorax sp. HI3 DNA, complete genome blastn 738 259 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. HI3
19979590 19979590 PRJNA874604_P_NODE_94616_length_243_cov_0.905882_g94264_i0 PRJNA874604 94616 243 0.905882 2.20129326 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 193 1.24e-44   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g94264 i0 83.333 0.864197530864197 210 33 86 2 1 209 3692010 3692218 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 210 193 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
21253676 21253676 PRJNA874604_P_NODE_26737_length_360_cov_1.073171_g26385_i0 PRJNA874604 26737 360 1.073171 3.8634156 Bdellovibrio sp. HM001 3113894 Bacteria Bacteria 398 3.8e-106   NTclustered gi|2663428595|dbj|AP029174.1| 3113894 g26385 i0 86.63 0.997222222222222 359 48 99 0 1 359 3486622 3486980 Bdellovibrio sp. HM001 DNA, complete genome blastn 359 398 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HM001
23803701 23803701 PRJNA874604_P_NODE_22019_length_388_cov_2.644444_g21667_i0 PRJNA874604 22019 388 2.644444 10.26044272 Bdellovibrionales bacterium RIFOXYC1_FULL_54_43 1797397 Bacteria Bacteria 128 8.65e-33   NR OFZ52773.1 1797397 g21667 i0 50.4 2.01030927835052 129 63 99.7 1 1 387 216 343 OFZ52773.1 MAG: hypothetical protein A2428_04930 [Bdellovibrionales bacterium RIFOXYC1_FULL_54_43] diamond 780 128 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYC1_FULL_54_43
23804643 23804643 PRJNA874604_P_NODE_71779_length_250_cov_0.870056_g71427_i0 PRJNA874604 71779 250 0.870056 2.17514 Bacteriovorax sp. HI3 2984118 Bacteria Bacteria 383 7.07e-102   NTclustered gi|2321225508|dbj|AP026946.1| 2984118 g71427 i0 94.378 2.996 249 14 99 0 1 249 3010651 3010403 Bacteriovorax sp. HI3 DNA, complete genome blastn 749 383 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. HI3
26706752 26706752 PRJNA874604_P_NODE_68841_length_251_cov_0.865169_g68489_i0 PRJNA874604 68841 251 0.865169 2.17157419 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 170 3.1999999999999996e-49   NR MBL7663544.1 2081706 g68489 i0 100 0.99203187250996006 83 0 99.2 0 251 3 239 321 MBL7663544.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 249 170 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
26770387 26770387 PRJNA874604_P_NODE_71261_length_250_cov_1.564972_g70909_i0 PRJNA874604 71261 250 1.564972 3.91243 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 100 2.71e-22   NR HEY8280679.1 3034175 g70909 i0 61.6 0.876 73 28 87.6 0 32 250 936 1008 HEY8280679.1 hypothetical protein [Bdellovibrionota bacterium] diamond 219 100 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
26960132 26960132 PRJNA874604_P_NODE_44582_length_296_cov_1.381166_g44230_i0 PRJNA874604 44582 296 1.381166 4.08825136 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 102 6.63e-23   NR MCB0416031.1 2053517 g44230 i0 48.4 0.942567567567568 93 48 94.3 0 14 292 405 497 MCB0416031.1 hypothetical protein [Bdellovibrionales bacterium] diamond 279 102 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27181467 27181467 PRJNA874604_P_NODE_41362_length_305_cov_1.840517_g41010_i0 PRJNA874604 41362 305 1.840517 5.61357685 Silvanigrellales bacterium 2767476 Bacteria Bacteria 100 2.9e-22   NR MCA2961534.1 2767476 g41010 i0 49.5 1.80983606557377 93 46 90.5 1 305 30 341 433 MCA2961534.1 VCBS repeat-containing protein [Silvanigrellales bacterium] diamond 552 100 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales     Silvanigrellales bacterium
27592479 27592479 PRJNA874604_P_NODE_63304_length_260_cov_1.449198_g62952_i0 PRJNA874604 63304 260 1.449198 3.7679148 Bacteriovorax stolpii 960 Bacteria Bacteria 125 5.969999999999998e-32   NR WP_158649677.1 960 g62952 i0 80.2 1.86923076923077 81 16 93.5 0 3 245 204 284 WP_158649677.1 TolC family protein [Bacteriovorax stolpii] diamond 486 125 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
27844757 27844757 PRJNA874604_P_NODE_86604_length_245_cov_0.895349_g86252_i0 PRJNA874604 86604 245 0.895349 2.19360505 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 45.8 5.26e-4   NR HTL13358.1 3034175 g86252 i0 42.3 0.636734693877551 52 30 63.7 0 50 205 13 64 HTL13358.1 adenosine deaminase [Bdellovibrionota bacterium] diamond 156 45.8 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27844763 27844763 PRJNA874604_P_NODE_96604_length_242_cov_0.911243_g96252_i0 PRJNA874604 96604 242 0.911243 2.20520806 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 55.1 4.85e-8   NR MFP5491413.1 3058048 g96252 i0 72.7 0.818181818181818 33 9 40.9 0 4 102 23 55 MFP5491413.1 L,D-transpeptidase family protein [Bacteriovoracia bacterium] diamond 198 55.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
27876437 27876437 PRJNA874604_P_NODE_64485_length_258_cov_1.410811_g64133_i0 PRJNA874604 64485 258 1.410811 3.63989238 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 152 6.01e-41   NR MBL7556403.1 2026715 g64133 i0 92.9 0.988372093023256 85 6 98.8 0 257 3 319 403 MBL7556403.1 lysophospholipid acyltransferase family protein [Pseudobdellovibrionaceae bacterium] diamond 255 152 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
28191992 28191992 PRJNA874604_P_NODE_69286_length_251_cov_0.865169_g68934_i0 PRJNA874604 69286 251 0.865169 2.17157419 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 47.4 8.17e-4   NR HEY8279365.1 3034175 g68934 i0 37 0.968127490039841 81 46 96.8 1 7 249 1 76 HEY8279365.1 hypothetical protein [Bdellovibrionota bacterium] diamond 243 47.4 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28223623 28223623 PRJNA874604_P_NODE_101046_length_237_cov_4.762195_g100694_i0 PRJNA874604 101046 237 4.762195 11.28640215 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 65.5 6.86e-12   NR MFA5584075.1 2081706 g100694 i0 75.7 0.468354430379747 37 9 46.8 0 111 221 1 37 MFA5584075.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 111 65.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
28286753 28286753 PRJNA874604_P_NODE_72846_length_250_cov_0.870056_g72494_i0 PRJNA874604 72846 250 0.870056 2.17514 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 141 5.12e-37   NR HLT22408.1 2081706 g72494 i0 79.5 0.996 83 17 99.6 0 2 250 72 154 HLT22408.1 PAS domain-containing methyl-accepting chemotaxis protein [Bacteriovoracaceae bacterium] diamond 249 141 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
28665971 28665971 PRJNA874604_P_NODE_72027_length_250_cov_0.870056_g71675_i0 PRJNA874604 72027 250 0.870056 2.17514 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 54.7 2.55e-6   NR PZP53187.1 349221 g71675 i0 48.2 0.672 56 29 67.2 0 83 250 397 452 PZP53187.1 MAG: hypothetical protein DI586_11325, partial [Micavibrio aeruginosavorus] diamond 168 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
29044903 29044903 PRJNA874604_P_NODE_90428_length_244_cov_0.900585_g90076_i0 PRJNA874604 90428 244 0.900585 2.1974274 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 53.1 7.61e-6   NR MBL7545207.1 2026715 g90076 i0 46.3 0.663934426229508 54 29 66.4 0 81 242 1 54 MBL7545207.1 glycosyltransferase family 9 protein [Pseudobdellovibrionaceae bacterium] diamond 162 53.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29297334 29297334 PRJNA874604_P_NODE_78109_length_248_cov_0.880000_g77757_i0 PRJNA874604 78109 248 0.88 2.1824 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 137 6.28e-37   NR HLT22375.1 2081706 g77757 i0 95.1 0.991935483870968 82 4 99.2 0 3 248 190 271 HLT22375.1 NupC/NupG family nucleoside CNT transporter [Bacteriovoracaceae bacterium] diamond 246 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29739079 29739079 PRJNA874604_P_NODE_74910_length_249_cov_0.875000_g74558_i0 PRJNA874604 74910 249 0.875 2.17875 Bacteriovorax stolpii 960 Bacteria Bacteria 146 4.24e-39   NR WP_142409415.1 960 g74558 i0 92.8 1 83 6 100 0 249 1 407 489 WP_142409415.1 HAMP domain-containing methyl-accepting chemotaxis protein [Bacteriovorax stolpii] diamond 249 146 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
29992099 29992099 PRJNA874604_P_NODE_66371_length_254_cov_2.453039_g66019_i0 PRJNA874604 66371 254 2.453039 6.23071906 Bdellovibrio sp. 28201 Bacteria Bacteria 62.4 5.13e-9   NR MBC7465098.1 28201 g66019 i0 46.1 0.897637795275591 76 39 88.6 2 225 1 127 201 MBC7465098.1 hypothetical protein [Bdellovibrio sp.] diamond 228 62.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
30000234 30000234 PRJNA874604_P_NODE_50891_length_282_cov_2.076555_g50539_i0 PRJNA874604 50891 282 2.076555 5.8558851 Bdellovibrionota 3018035 Bacteria Bacteria 80.1 2.23e-16   NR MBL7671357.1 2026715 g50539 i0 76.1 2.4468085106383 46 11 48.9 0 281 144 5 50 MBL7671357.1 TIGR00645 family protein [Pseudobdellovibrionaceae bacterium] diamond 690 80.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30023813 30023813 PRJNA874604_P_NODE_76691_length_249_cov_0.875000_g76339_i0 PRJNA874604 76691 249 0.875 2.17875 Pseudobacteriovorax antillogorgiicola 1513793 Bacteria Bacteria 75.1 1.93e-14   NR WP_132317945.1 1513793 g76339 i0 47.6 1.01204819277108 84 41 98.8 2 247 2 20 102 WP_132317945.1 DUF2589 domain-containing protein [Pseudobacteriovorax antillogorgiicola] diamond 252 75.1 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Pseudobacteriovoracaceae Pseudobacteriovorax Pseudobacteriovorax antillogorgiicola
30529062 30529062 PRJNA874604_P_NODE_100793_length_241_cov_0.857143_g100441_i0 PRJNA874604 100793 241 0.857143 2.06571463 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 51.2 3.21e-5   NR MBX3019932.1 2026715 g100441 i0 42.9 0.697095435684647 56 32 69.7 0 20 187 60 115 MBX3019932.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 168 51.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30908441 30908441 PRJNA874604_P_NODE_67654_length_252_cov_1.720670_g67302_i0 PRJNA874604 67654 252 1.72067 4.3360884 Bacteriovorax stolpii 960 Bacteria Bacteria 134 2.21e-36   NR WP_142409106.1 960 g67302 i0 79.8 1 84 17 100 0 1 252 202 285 WP_142409106.1 hypothetical protein [Bacteriovorax stolpii] diamond 252 134 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
30971632 30971632 PRJNA874604_P_NODE_89594_length_244_cov_0.900585_g89242_i0 PRJNA874604 89594 244 0.900585 2.1974274 Bacteriovorax stolpii 960 Bacteria Bacteria 63.5 7.57e-10   NR WP_133566731.1 960 g89242 i0 70.7 0.504098360655738 41 12 50.4 0 123 1 29 69 WP_133566731.1 hypothetical protein [Bacteriovorax stolpii] diamond 123 63.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
31793360 31793360 PRJNA874604_P_NODE_100677_length_241_cov_0.910714_g100325_i0 PRJNA874604 100677 241 0.910714 2.19482074 Halobacteriovoraceae bacterium 2026745 Bacteria Bacteria 82 5.38e-16   NR MBT3584701.1 2026745 g100325 i0 43 0.983402489626556 79 45 98.3 0 4 240 81 159 MBT3584701.1 penicillin acylase family protein [Halobacteriovoraceae bacterium] diamond 237 82 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
32015068 32015068 PRJNA874604_P_NODE_53778_length_277_cov_1.509804_g53426_i0 PRJNA874604 53778 277 1.509804 4.18215708 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 116 7.8199999999999985e-28   NR MBX9766224.1 2053517 g53426 i0 68.5 0.996389891696751 92 29 99.6 0 276 1 207 298 MBX9766224.1 DUF87 domain-containing protein [Bdellovibrionales bacterium] diamond 276 116 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32371367 32371367 PRJNA874604_P_NODE_79419_length_248_cov_0.880000_g79067_i0 PRJNA874604 79419 248 0.88 2.1824 Pseudomonadati 3379134 Bacteria Bacteria 128 3.56e-32   NR MCB0379325.1 2053517 g79067 i0 74.1 21.5564516129032 81 21 98 0 245 3 121 201 MCB0379325.1 methionine synthase [Bdellovibrionales bacterium] diamond 5346 129 0.992248062015504 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32616026 32616026 PRJNA874604_P_NODE_81860_length_247_cov_0.885057_g81508_i0 PRJNA874604 81860 247 0.885057 2.18609079 Bacteriovorax sp. Seq25_V 1201288 Bacteria Bacteria 112 1.55e-27   NR WP_021273972.1 1201288 g81508 i0 61.7 0.983805668016194 81 31 98.4 0 244 2 195 275 WP_021273972.1 lipoate--protein ligase [Bacteriovorax sp. Seq25_V] diamond 243 112 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. Seq25_V
32867840 32867840 PRJNA874604_P_NODE_82100_length_247_cov_0.885057_g81748_i0 PRJNA874604 82100 247 0.885057 2.18609079 Oligoflexia bacterium 2599941 Bacteria Bacteria 132 8.11e-34   NR MCM2279263.1 2599941 g81748 i0 79 3.93522267206478 81 17 98.4 0 3 245 587 667 MCM2279263.1 ATP-binding protein [Oligoflexia bacterium] diamond 972 132 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;