RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA874604", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA874604 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2513804 2513804 PRJNA874604_P_NODE_82382_length_247_cov_0.885057_g82030_i0 PRJNA874604 82382 247 0.885057 2.18609079 Mesomycoplasma 2923352 Bacteria Bacteria 457 4.05e-124   NTclustered gi|1720621726|gb|CP035041.1| 2100 g82030 i0 100 15.9595141700405 247 0 100 0 1 247 759108 759354 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 3942 457 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
12717702 12717702 PRJNA874604_P_NODE_61930_length_262_cov_2.068783_g61578_i0 PRJNA874604 61930 262 2.068783 5.42021146 Mesomycoplasma 2923352 Bacteria Bacteria 484 1.99e-132   NTclustered gi|1720621726|gb|CP035041.1| 2100 g61578 i0 100 15.9236641221374 262 0 100 0 1 262 644031 643770 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 4172 484 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
26746402 26746402 PRJNA874604_P_NODE_33181_length_332_cov_1.189189_g32829_i0 PRJNA874604 33181 332 1.189189 3.94810748 Bacillati 1783272 Bacteria Bacteria 110 7.079999999999999e-28   NR MCI7634018.1 37628 g32829 i0 57.3 2.7921686746988 103 42 93.1 1 23 331 23 123 MCI7634018.1 NUMOD4 motif-containing HNH endonuclease [Mollicutes bacterium] diamond 927 110 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;