RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA874604", tax_clade = "Sar" and tax_phylum = "Foraminifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA874604 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27560573 27560573 PRJNA874604_P_NODE_37884_length_316_cov_0.950617_g37532_i0 PRJNA874604 37884 316 0.950617 3.00394972 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 80.5 4.71e-15   NR ETO24313.1 46433 g37532 i0 46.5 1.87025316455696 99 53 94 0 18 314 410 508 ETO24313.1 hypothetical protein RFI_12847 [Reticulomyxa filosa] diamond 591 80.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28791949 28791949 PRJNA874604_P_NODE_26347_length_362_cov_1.110727_g25995_i0 PRJNA874604 26347 362 1.110727 4.02083174 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 164 2.27e-45   NR ETO21496.1 46433 g25995 i0 60.9 2.05524861878453 128 42 99.4 3 1 360 226 353 ETO21496.1 hypothetical protein RFI_15702 [Reticulomyxa filosa] diamond 744 164 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29139704 29139704 PRJNA874604_P_NODE_47909_length_288_cov_1.432558_g47557_i0 PRJNA874604 47909 288 1.432558 4.12576704 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 63.5 3.07e-9   NR ETO31587.1 46433 g47557 i0 47.1 0.729166666666667 70 37 72.9 0 79 288 44 113 ETO31587.1 phosphoesterase family protein [Reticulomyxa filosa] diamond 210 63.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;