RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA874604" and tax_clade = "SAR202 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR202 cluster · 1 ✖

bioproject 1

  • PRJNA874604 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30655448 30655448 PRJNA874604_P_NODE_74533_length_249_cov_1.267045_g74181_i0 PRJNA874604 74533 249 1.267045 3.15494205 Candidatus Lucifugimonas marina 3038979 Bacteria Bacteria 56.2 7.03e-7   NR WP_342827281.1 3038979 g74181 i0 59.5 4.44578313253012 42 17 50.6 0 247 122 807 848 WP_342827281.1 hypothetical protein [Candidatus Lucifugimonas marina] diamond 1107 56.2 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia Candidatus Lucifugimonadales Candidatus Lucifugimonadaceae Candidatus Lucifugimonas Candidatus Lucifugimonas marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;