RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA874604", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA874604 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30529067 30529067 PRJNA874604_P_NODE_34613_length_327_cov_0.909449_g34261_i0 PRJNA874604 34613 327 0.909449 2.97389823 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 92.4 3.88e-20   NR MCX5701344.1 2035772 g34261 i0 60.3 0.577981651376147 63 25 57.8 0 325 137 203 265 MCX5701344.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase [Candidatus Omnitrophota bacterium] diamond 189 92.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30908452 30908452 PRJNA874604_P_NODE_88434_length_245_cov_0.895349_g88082_i0 PRJNA874604 88434 245 0.895349 2.19360505 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 60.5 2.09e-8   NR MBI4309105.1 2035772 g88082 i0 38 4.51836734693878 79 49 96.7 0 2 238 48 126 MBI4309105.1 glutamate--tRNA ligase [Candidatus Omnitrophota bacterium] diamond 1107 60.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32521641 32521641 PRJNA874604_P_NODE_58779_length_268_cov_1.461538_g58427_i0 PRJNA874604 58779 268 1.461538 3.91692184 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 43.5 0.0257   NR MEW5894418.1 2035772 g58427 i0 28.9 1.08582089552239 97 58 96.3 2 2 259 206 302 MEW5894418.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 291 43.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;