RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA874604", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA874604 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13991989 13991989 PRJNA874604_P_NODE_62711_length_261_cov_1.569149_g62359_i0 PRJNA874604 62711 261 1.569149 4.09547889 Methanocaldococcus 196118 Archaea Archaea 60.2 1.42e-4   NTclustered gi|103488854|gb|DQ516907.1| 2190 g62359 i0 100 0.245210727969349 32 0 12 0 230 261 69 38 Methanocaldococcus jannaschii spike-in control MJ-8000-191 genomic sequence blastn 64 60.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
27505873 27505873 PRJNA874604_P_NODE_81083_length_247_cov_0.885057_g80731_i0 PRJNA874604 81083 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 42.7 0.0363   NR MBR3156603.1 66852 g80731 i0 36 2.36842105263158 75 38 91.1 2 233 9 156 220 MBR3156603.1 hypothetical protein [Methanobrevibacter sp.] diamond 585 43.1 0.990719257540603 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30916544 30916544 PRJNA874604_P_NODE_88854_length_245_cov_0.860465_g88502_i0 PRJNA874604 88854 245 0.860465 2.10813925 Methanocaldococcaceae 196117 Archaea Archaea 43.1 0.0267   NR WP_013799082.1 2189 g88502 i0 30.7 1.62857142857143 75 51 90.6 1 245 24 238 312 WP_013799082.1 mechanosensitive ion channel family protein [Methanotorris igneus] diamond 399 43.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanotorris Methanotorris igneus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;