RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA874604", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA874604 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29802438 29802438 PRJNA874604_P_NODE_35091_length_325_cov_1.222222_g34739_i0 PRJNA874604 35091 325 1.222222 3.9722215 Fibrobacteraceae bacterium 2652288 Bacteria Bacteria 44.3 0.0275   NR HSQ42416.1 2652288 g34739 i0 36.1 0.664615384615385 72 40 66.5 1 314 99 930 995 HSQ42416.1 N-6 DNA methylase [Fibrobacteraceae bacterium] diamond 216 44.3 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae   Fibrobacteraceae bacterium
31730250 31730250 PRJNA874604_P_NODE_87697_length_245_cov_0.895349_g87345_i0 PRJNA874604 87697 245 0.895349 2.19360505 Fibrobacterota bacterium 2052160 Bacteria Bacteria 49.3 6.21e-5   NR MDB5049147.1 2052160 g87345 i0 33.3 2.96326530612245 81 52 99.2 2 243 1 5 83 MDB5049147.1 hypothetical protein [Fibrobacterota bacterium] diamond 726 49.3 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
32615999 32615999 PRJNA874604_P_NODE_21580_length_392_cov_0.962382_g21228_i0 PRJNA874604 21580 392 0.962382 3.77253744 Fibrobacter sp. 35828 Bacteria Bacteria 64.7 3.92e-9   NR WP_290938608.1 35828 g21228 i0 75.6 0.933673469387755 41 10 31.4 0 390 268 24 64 WP_290938608.1 BspA family leucine-rich repeat surface protein [Fibrobacter sp.] diamond 366 64.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;