RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA870096" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA870096 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16539766 16539766 PRJNA870096_S_NODE_111433_length_168_cov_1.512000_g109769_i0 PRJNA870096 111433 168 1.512 2.54016 Gammaretrovirus 153135 Viruses Viruses 294 2.12e-75   NTclustered gi|56753526|gb|AY714518.2| 11786 g109769 i0 98.214 100 168 3 100 0 1 168 1067 1234 Murine leukemia virus isolate M-RV_12A integrase (pol) and envelope glycoprotein (env) genes, partial cds blastn 16800 294 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
27371568 27371568 PRJNA870096_S_NODE_8883_length_621_cov_6.205882_g7376_i0 PRJNA870096 8883 621 6.205882 38.53852722 Moloney murine leukemia virus 11801 Viruses Viruses 394 1.98e-123   NR NP_057933.2 11801 g7376 i0 96.6 3.98067632850242 206 7 99.5 0 620 3 1087 1292 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 2472 394 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
28097420 28097420 PRJNA870096_S_NODE_136565_length_153_cov_1.154545_g134901_i0 PRJNA870096 136565 153 1.154545 1.76645385 Retroviridae sp. 2681591 Viruses Viruses 73.2 2.06e-13   NR UGO47158.1 2681591 g134901 i0 56.5 3.66666666666667 46 20 90.2 0 141 4 287 332 UGO47158.1 MAG: envelope protein [Retroviridae sp.] diamond 561 73.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
31825037 31825037 PRJNA870096_S_NODE_6797_length_717_cov_4.065282_g5446_i0 PRJNA870096 6797 717 4.065282 29.14807194 Gammaretrovirus murleu 3428959 Viruses Viruses 476 1.2799999999999998e-165   NR 8WUS_E 11801 g5446 i0 99.1 2.91213389121339 232 2 97.1 0 697 2 138 369 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 2088 476 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;