contig_metadata
26 rows where bioproject = "PRJNA870096", tax_kingdom = "Bacillati" and tax_phylum = "Actinomycetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2512868 | 2512868 | PRJNA870096_S_NODE_49162_length_251_cov_1.985577_g47498_i0 | PRJNA870096 | 49162 | 251 | 1.985577 | 4.98379827 | Microbacterium | 33882 | Bacteria | Bacteria | 464 | 2.47e-126 | NTclustered | gi|392312294|gb|JQ897420.1| | 36807 | g47498 | i0 | 100 | 100.462151394422 | 251 | 0 | 100 | 0 | 1 | 251 | 17 | 267 | Microbacterium laevaniformans 16S ribosomal RNA gene, partial sequence | blastn | 25216 | 464 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Microbacterium | Microbacterium laevaniformans | ||
| 6341223 | 6341223 | PRJNA870096_S_NODE_23865_length_369_cov_3.466258_g22202_i0 | PRJNA870096 | 23865 | 369 | 3.466258 | 12.79049202 | PVC group | 1783257 | Bacteria | Bacteria | 69.4 | 3.48e-7 | NTclustered | gi|1346221182|gb|CP026923.1| | 1159327 | g22202 | i0 | 95.349 | 12.0487804878049 | 43 | 2 | 12 | 0 | 1 | 43 | 1691139 | 1691181 | Pontimonas salivibrio strain CL-TW6 chromosome, complete genome | blastn | 4446 | 69.4 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Pontimonas | Pontimonas salivibrio | ||
| 8502717 | 8502717 | PRJNA870096_S_NODE_145387_length_150_cov_1.345794_g143723_i0 | PRJNA870096 | 145387 | 150 | 1.345794 | 2.018691 | Nocardioides okcheonensis | 2894081 | Bacteria | Bacteria | 176 | 6.95e-40 | NTclustered | gi|2156608594|gb|CP087710.1| | 2894081 | g143723 | i0 | 88.079 | 107.466666666667 | 151 | 15 | 100 | 3 | 1 | 150 | 745377 | 745229 | Nocardioides okcheonensis strain MMS20-HV4-12 chromosome, complete genome | blastn | 16120 | 176 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Nocardioidaceae | Nocardioides | Nocardioides okcheonensis | ||
| 9777960 | 9777960 | PRJNA870096_S_NODE_36288_length_296_cov_1.031621_g34624_i0 | PRJNA870096 | 36288 | 296 | 1.031621 | 3.05359816 | Streptomyces bacillaris | 68179 | Bacteria | Bacteria | 52.8 | 0.027 | NTclustered | gi|1409660139|gb|CP029378.1| | 68179 | g34624 | i0 | 100 | 0.0945945945945946 | 28 | 0 | 9 | 0 | 136 | 163 | 4653081 | 4653054 | Streptomyces bacillaris strain ATCC 15855 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces bacillaris | ||
| 11053651 | 11053651 | PRJNA870096_S_NODE_27869_length_340_cov_3.131313_g26205_i0 | PRJNA870096 | 27869 | 340 | 3.131313 | 10.6464642 | Rhodococcus sp. B7740 | 1564114 | Bacteria | Bacteria | 584 | 2.56e-162 | NTclustered | gi|769526933|gb|CP010797.1| | 1564114 | g26205 | i0 | 97.647 | 81.9882352941176 | 340 | 8 | 100 | 0 | 1 | 340 | 1952536 | 1952875 | Rhodococcus sp. B7740, complete genome | blastn | 27876 | 584 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcus | Rhodococcus sp. B7740 | ||
| 12716773 | 12716773 | PRJNA870096_S_NODE_120130_length_162_cov_2.016807_g118466_i0 | PRJNA870096 | 120130 | 162 | 2.016807 | 3.26722734 | Rhodococcus | 1827 | Bacteria | Bacteria | 283 | 4.39e-72 | NTclustered | gi|2660106423|gb|CP138905.1| | 1831 | g118466 | i0 | 98.148 | 75.5864197530864 | 162 | 3 | 100 | 0 | 1 | 162 | 38162 | 38323 | MAG: Rhodococcus sp. (in: high G+C Gram-positive bacteria) isolate 1088c chromosome | blastn | 12245 | 283 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcus | Rhodococcus sp. (in: high G+C Gram-positive bacteria) | ||
| 13602926 | 13602926 | PRJNA870096_S_NODE_10191_length_578_cov_4.183178_g8629_i0 | PRJNA870096 | 10191 | 578 | 4.183178 | 24.17876884 | Microbacterium sp. PM5 | 2014534 | Bacteria | Bacteria | 754 | 0 | NTclustered | gi|1419380645|gb|CP022162.1| | 2014534 | g8629 | i0 | 93.077 | 245.399653979239 | 520 | 29 | 89 | 5 | 1 | 514 | 1409493 | 1410011 | Microbacterium sp. PM5 genome | blastn | 141841 | 754 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Microbacterium | Microbacterium sp. PM5 | ||
| 16539943 | 16539943 | PRJNA870096_S_NODE_7033_length_704_cov_5.438729_g5664_i0 | PRJNA870096 | 7033 | 704 | 5.438729 | 38.28865216 | Nocardiaceae | 85025 | Bacteria | Bacteria | 1131 | 0 | NTclustered | gi|2637134465|gb|CP140264.1| | 1828 | g5664 | i0 | 98.742 | 369.742897727273 | 636 | 8 | 90 | 0 | 69 | 704 | 1710611 | 1709976 | Rhodococcoides fascians strain GS01 chromosome, complete genome | blastn | 260299 | 1131 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcoides | Rhodococcoides fascians | ||
| 17428581 | 17428581 | PRJNA870096_S_NODE_65334_length_217_cov_1.103448_g63670_i0 | PRJNA870096 | 65334 | 217 | 1.103448 | 2.39448216 | Rubrobacter xylanophilus | 49319 | Bacteria | Bacteria | 359 | 1.01e-94 | NTclustered | gi|2076041053|gb|CP073779.1| | 266117 | g63670 | i0 | 97.17 | 2.93087557603687 | 212 | 6 | 98 | 0 | 6 | 217 | 2753641 | 2753430 | Rubrobacter xylanophilus DSM 9941 chromosome | blastn | 636 | 359 | 1 | Bacteria | Bacillati | Actinomycetota | Rubrobacteria | Rubrobacterales | Rubrobacteraceae | Rubrobacter | Rubrobacter xylanophilus | ||
| 18701206 | 18701206 | PRJNA870096_S_NODE_15155_length_470_cov_2.241218_g13517_i0 | PRJNA870096 | 15155 | 470 | 2.241218 | 10.5337246 | Microbacterium proteolyticum | 1572644 | Bacteria | Bacteria | 774 | 0 | NTclustered | gi|2482566189|gb|CP121274.1| | 1572644 | g13517 | i0 | 96.383 | 177.51914893617 | 470 | 17 | 100 | 0 | 1 | 470 | 2452224 | 2452693 | Microbacterium proteolyticum strain ustc chromosome, complete genome | blastn | 83434 | 774 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Microbacterium | Microbacterium proteolyticum | ||
| 25076099 | 25076099 | PRJNA870096_S_NODE_32900_length_312_cov_1.840149_g31236_i0 | PRJNA870096 | 32900 | 312 | 1.840149 | 5.74126488 | Rhodococcoides fascians | 1828 | Bacteria | Bacteria | 505 | 1.8599999999999995e-138 | NTclustered | gi|2637134465|gb|CP140264.1| | 1828 | g31236 | i0 | 95.847 | 101.650641025641 | 313 | 11 | 100 | 2 | 1 | 312 | 1243174 | 1242863 | Rhodococcoides fascians strain GS01 chromosome, complete genome | blastn | 31715 | 505 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcoides | Rhodococcoides fascians | ||
| 25464016 | 25464016 | PRJNA870096_S_NODE_6520_length_732_cov_6.626996_g5201_i0 | PRJNA870096 | 6520 | 732 | 6.626996 | 48.50961072 | Microbacterium | 33882 | Bacteria | Bacteria | 1317 | 0 | NTclustered | gi|2164491193|gb|CP082781.1| | 156977 | g5201 | i0 | 99.314 | 185.572404371585 | 729 | 4 | 99 | 1 | 5 | 732 | 397671 | 396943 | Microbacterium resistens strain MZT7 chromosome, complete genome | blastn | 135839 | 1330 | 0.990225563909774 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Microbacterium | Microbacterium resistens | ||
| 26801931 | 26801931 | PRJNA870096_S_NODE_12481_length_521_cov_4.537657_g10861_i0 | PRJNA870096 | 12481 | 521 | 4.537657 | 23.64119297 | Kribbella turkmenica | 2530375 | Bacteria | Bacteria | 51.2 | 6.59e-4 | NR | WP_132315269.1 | 2530375 | g10861 | i0 | 33.3 | 0.293666026871401 | 51 | 34 | 29.4 | 0 | 486 | 334 | 483 | 533 | WP_132315269.1 tectonin domain-containing protein [Kribbella turkmenica] | diamond | 153 | 51.2 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Kribbellaceae | Kribbella | Kribbella turkmenica | ||
| 26897148 | 26897148 | PRJNA870096_S_NODE_116101_length_165_cov_1.180328_g114437_i0 | PRJNA870096 | 116101 | 165 | 1.180328 | 1.9475412 | Actinomycetota bacterium | 2900548 | Bacteria | Bacteria | 45.1 | 0.00196 | NR | MEO8477945.1 | 2900548 | g114437 | i0 | 63 | 5.45454545454545 | 27 | 10 | 49.1 | 0 | 2 | 82 | 598 | 624 | MEO8477945.1 primary-amine oxidase [Actinomycetota bacterium] | diamond | 900 | 45.1 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetota bacterium | ||||||
| 27023527 | 27023527 | PRJNA870096_S_NODE_53222_length_241_cov_1.616162_g51558_i0 | PRJNA870096 | 53222 | 241 | 1.616162 | 3.89495042 | Smaragdicoccus niigatensis | 359359 | Bacteria | Bacteria | 54.3 | 5.32e-7 | NR | WP_018160479.1 | 359359 | g51558 | i0 | 39.4 | 2.66390041493776 | 71 | 43 | 88.4 | 0 | 25 | 237 | 32 | 102 | WP_018160479.1 nuclear transport factor 2 family protein [Smaragdicoccus niigatensis] | diamond | 642 | 54.3 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Smaragdicoccus | Smaragdicoccus niigatensis | ||
| 27442789 | 27442789 | PRJNA870096_S_NODE_143583_length_151_cov_0.888889_g141919_i0 | PRJNA870096 | 143583 | 151 | 0.888889 | 1.34222239 | Corynebacterium | 1716 | Bacteria | Bacteria | 40.8 | 0.0467 | NR | WP_187405490.1 | 2044585 | g141919 | i0 | 39.5 | 2.56291390728477 | 43 | 26 | 85.4 | 0 | 1 | 129 | 125 | 167 | WP_187405490.1 hypothetical protein [Corynebacterium sp. LK15] | diamond | 387 | 41.2 | 0.990291262135922 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Corynebacterium | Corynebacterium sp. LK15 | ||
| 27727113 | 27727113 | PRJNA870096_S_NODE_126504_length_158_cov_2.086957_g124840_i0 | PRJNA870096 | 126504 | 158 | 2.086957 | 3.29739206 | Bacteria | 2 | Bacteria | Bacteria | 58.5 | 3.09e-8 | NR | HJQ78200.1 | 2080302 | g124840 | i0 | 67.6 | 8.9050632911392391 | 37 | 12 | 70.3 | 0 | 158 | 48 | 350 | 386 | HJQ78200.1 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase [Acidimicrobiia bacterium] | diamond | 1407 | 58.5 | 1 | Bacteria | Bacillati | Actinomycetota | Acidimicrobiia | Acidimicrobiia bacterium | |||||
| 27813555 | 27813555 | PRJNA870096_S_NODE_50724_length_247_cov_2.117647_g49060_i0 | PRJNA870096 | 50724 | 247 | 2.117647 | 5.23058809 | Streptomyces tsukubensis | 83656 | Bacteria | Bacteria | 49.3 | 9.39e-5 | NR | WP_077970353.1 | 83656 | g49060 | i0 | 38.6 | 0.850202429149798 | 70 | 40 | 81.4 | 1 | 38 | 238 | 10 | 79 | WP_077970353.1 EF-hand domain-containing protein [Streptomyces tsukubensis] | diamond | 210 | 49.3 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces tsukubensis | ||
| 28894779 | 28894779 | PRJNA870096_S_NODE_93468_length_182_cov_1.726619_g91804_i0 | PRJNA870096 | 93468 | 182 | 1.726619 | 3.14244658 | Bacteria | 2 | Bacteria | Bacteria | 100 | 1.68e-23 | NR | WP_104122816.1 | 547334 | g91804 | i0 | 75 | 1.97802197802198 | 60 | 15 | 98.9 | 0 | 181 | 2 | 191 | 250 | WP_104122816.1 VPA1269 family protein [Arthrobacter pityocampae] | diamond | 360 | 100 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Arthrobacter | Arthrobacter pityocampae | ||
| 29526493 | 29526493 | PRJNA870096_S_NODE_92870_length_183_cov_1.028571_g91206_i0 | PRJNA870096 | 92870 | 183 | 1.028571 | 1.88228493 | PVC group | 1783257 | Bacteria | Bacteria | 53.9 | 1.77e-6 | NR | WP_301648591.1 | 29301 | g91206 | i0 | 44.8 | 8.98360655737705 | 58 | 32 | 95.1 | 0 | 5 | 178 | 168 | 225 | WP_301648591.1 hypothetical protein [Streptomyces arenae] | diamond | 1644 | 53.9 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces arenae | ||
| 29865641 | 29865641 | PRJNA870096_S_NODE_70531_length_208_cov_3.400000_g68867_i0 | PRJNA870096 | 70531 | 208 | 3.4 | 7.072 | Gaiellaceae bacterium | 2838783 | Bacteria | Bacteria | 85.1 | 9.82e-19 | NR | HXK13170.1 | 2838783 | g68867 | i0 | 56.5 | 4.93269230769231 | 69 | 30 | 99.5 | 0 | 208 | 2 | 13 | 81 | HXK13170.1 thioredoxin [Gaiellaceae bacterium] | diamond | 1026 | 85.1 | 1 | Bacteria | Bacillati | Actinomycetota | Thermoleophilia | Gaiellales | Gaiellaceae | Gaiellaceae bacterium | |||
| 30371583 | 30371583 | PRJNA870096_S_NODE_42852_length_270_cov_6.449339_g41188_i0 | PRJNA870096 | 42852 | 270 | 6.449339 | 17.4132153 | Kitasatospora sp. NBC_ | 1871188 | Bacteria | Bacteria | 80.5 | 4.32e-17 | NR | WP_371520111.1 | 2903574 | g41188 | i0 | 67.2 | 0.644444444444444 | 58 | 17 | 62.2 | 1 | 168 | 1 | 63 | 120 | WP_371520111.1 nuclear transport factor 2 family protein [Kitasatospora sp. NBC_01300] | diamond | 174 | 80.5 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Kitasatospora | Kitasatospora sp. NBC_01300 | ||
| 31255862 | 31255862 | PRJNA870096_S_NODE_40455_length_279_cov_2.033898_g38791_i0 | PRJNA870096 | 40455 | 279 | 2.033898 | 5.67457542 | Microthrixaceae bacterium | 2497627 | Bacteria | Bacteria | 42.7 | 0.0316 | NR | MCB1026617.1 | 2497627 | g38791 | i0 | 33.9 | 0.634408602150538 | 59 | 34 | 63.4 | 1 | 8 | 184 | 26 | 79 | MCB1026617.1 hypothetical protein [Microthrixaceae bacterium] | diamond | 177 | 42.7 | 1 | Bacteria | Bacillati | Actinomycetota | Acidimicrobiia | Acidimicrobiales | Microthrixaceae | Microthrixaceae bacterium | |||
| 31793346 | 31793346 | PRJNA870096_S_NODE_90157_length_185_cov_2.028169_g88493_i0 | PRJNA870096 | 90157 | 185 | 2.028169 | 3.75211265 | Nocardiopsis sp. NPDC | 310350 | Bacteria | Bacteria | 41.6 | 0.0452 | NR | WP_378895109.1 | 3346256 | g88493 | i0 | 41.3 | 0.745945945945946 | 46 | 24 | 69.7 | 1 | 4 | 132 | 308 | 353 | WP_378895109.1 LamG-like jellyroll fold domain-containing protein [Nocardiopsis sp. NPDC057823] | diamond | 138 | 41.6 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Streptosporangiales | Nocardiopsidaceae | Nocardiopsis | Nocardiopsis sp. NPDC057823 | ||
| 31825026 | 31825026 | PRJNA870096_S_NODE_106357_length_172_cov_1.116279_g104693_i0 | PRJNA870096 | 106357 | 172 | 1.116279 | 1.91999988 | Mycobacterium sp. | 1785 | Bacteria | Bacteria | 39.7 | 0.0449 | NR | MDT5217080.1 | 1785 | g104693 | i0 | 42 | 0.872093023255814 | 50 | 29 | 87.2 | 0 | 5 | 154 | 30 | 79 | MDT5217080.1 hypothetical protein [Mycobacterium sp.] | diamond | 150 | 39.7 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Mycobacterium | Mycobacterium sp. | ||
| 31920142 | 31920142 | PRJNA870096_S_NODE_54577_length_238_cov_1.205128_g52913_i0 | PRJNA870096 | 54577 | 238 | 1.205128 | 2.86820464 | Atopobium sp. | 1872650 | Bacteria | Bacteria | 40.8 | 0.0441 | NR | MBF0921145.1 | 1872650 | g52913 | i0 | 44.4 | 0.453781512605042 | 36 | 20 | 45.4 | 0 | 77 | 184 | 1 | 36 | MBF0921145.1 hypothetical protein [Atopobium sp.] | diamond | 108 | 40.8 | 1 | Bacteria | Bacillati | Actinomycetota | Coriobacteriia | Coriobacteriales | Atopobiaceae | Atopobium | Atopobium sp. |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;