RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA870096", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA870096 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26873749 26873749 PRJNA870096_S_NODE_140941_length_152_cov_0.880734_g139277_i0 PRJNA870096 140941 152 0.880734 1.33871568 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 89 5.49e-19   NR XP_001316433.1 412133 g139277 i0 76 1.97368421052632 50 12 98.7 0 1 150 188 237 XP_001316433.1 dynamin family [Trichomonas vaginalis G3] diamond 300 89.4 0.995525727069351 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31793335 31793335 PRJNA870096_S_NODE_23117_length_375_cov_4.765060_g21455_i0 PRJNA870096 23117 375 4.76506 17.868975 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 45.1 0.0258   NR XP_068366750.1 1144522 g21455 i0 42.9 0.392 49 28 39.2 0 22 168 1006 1054 XP_068366750.1 uncharacterized protein TRFO_03390 [Tritrichomonas foetus] diamond 147 45.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32623913 32623913 PRJNA870096_S_NODE_30160_length_326_cov_3.703180_g28496_i0 PRJNA870096 30160 326 3.70318 12.0723668 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 2.75e-5   NR XP_001302221.1 412133 g28496 i0 40.4 4.11349693251534 57 32 52.5 1 316 146 217 271 XP_001302221.1 protein serine/threonine kinase protein [Trichomonas vaginalis G3] diamond 1341 53.1 0.994350282485876 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;