RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA867519", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA867519 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14876176 14876176 PRJNA867519_P_NODE_34132_length_236_cov_2.036810_g33978_i0 PRJNA867519 34132 236 2.03681 4.8068716 Leptotrichia hongkongensis 554406 Bacteria Bacteria 436 4.999999999999999e-118   NTclustered gi|1708587163|dbj|AP019846.1| 554406 g33978 i0 100 19.9618644067797 236 0 100 0 1 236 1592340 1592575 Leptotrichia hongkongensis JMUB5056 DNA, complete genome blastn 4711 436 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hongkongensis
20363372 20363372 PRJNA867519_P_NODE_5716_length_453_cov_1.289474_g5562_i0 PRJNA867519 5716 453 1.289474 5.84131722 Cetobacterium 180162 Bacteria Bacteria 804 0   NTclustered gi|2865368125|gb|CP122294.1| 188913 g5562 i0 98.675 500.746136865342 453 6 100 0 1 453 279221 279673 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 226838 804 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
29738993 29738993 PRJNA867519_P_NODE_20830_length_272_cov_1.547739_g20676_i0 PRJNA867519 20830 272 1.547739 4.20985008 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 84.7 1.35e-17   NR MDN5303817.1 2053555 g20676 i0 50.6 0.981617647058823 89 10 98.2 1 1 267 127 181 MDN5303817.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Fusobacteriaceae bacterium] diamond 267 84.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;