RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA867519", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA867519 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26897129 26897129 PRJNA867519_P_NODE_841_length_994_cov_3.382193_g722_i0 PRJNA867519 841 994 3.382193 33.61899842 SAR324 cluster bacterium 2024889 Bacteria Bacteria 252 1.71e-76   NR MBF0276877.1 2024889 g722 i0 44.2 3.70020120724346 310 172 93.3 1 8 934 158 467 MBF0276877.1 M20/M25/M40 family metallo-hydrolase [SAR324 cluster bacterium] diamond 3678 252 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
28760400 28760400 PRJNA867519_P_NODE_687_length_1066_cov_10.582075_g580_i0 PRJNA867519 687 1066 10.582075 112.8049195 Persicimonas sp. 2766932 Bacteria Bacteria 103 9.58e-21   NR MFP4597704.1 2766932 g580 i0 42.8 1.16510318949343 138 66 38.8 2 170 583 22 146 MFP4597704.1 NAD-dependent epimerase/dehydratase family protein [Persicimonas sp.] diamond 1242 103 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas sp.
31603828 31603828 PRJNA867519_P_NODE_26776_length_250_cov_0.870056_g26622_i0 PRJNA867519 26776 250 0.870056 2.17514 Deltaproteobacteria bacterium RBG_13_65_1 2026735 Bacteria Bacteria 105 8.15e-26   NR OGP86621.1 1797835 g26622 i0 63.9 0.996 83 29 99.6 1 249 1 114 195 OGP86621.1 MAG: 3-oxoacyl-ACP reductase [Deltaproteobacteria bacterium RBG_13_65_10] diamond 249 105 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_65_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;