RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA867519", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA867519 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32181453 32181453 PRJNA867519_P_NODE_16898_length_289_cov_1.916667_g16744_i0 PRJNA867519 16898 289 1.916667 5.53916763 root 1 Root_unresolved Root_unresolved 43.5 0.0306   NR TLU84229.1 1095 g16744 i0 38.1 3.94463667820069 63 38 65.4 1 8 196 42 103 TLU84229.1 MAG: thioredoxin [Chlorobium sp.] diamond 1140 43.9 0.990888382687927 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
32686861 32686861 PRJNA867519_P_NODE_29160_length_247_cov_0.885057_g29006_i0 PRJNA867519 29160 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 55.8 9.36e-7   NR WP_012501227.1 100716 g29006 i0 66.7 3.02429149797571 39 13 47.4 0 20 136 93 131 WP_012501227.1 photosystem P840 reaction-center cytochrome c-551 [Chloroherpeton thalassium] diamond 747 55.8 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae Chloroherpeton Chloroherpeton thalassium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;