RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA864829", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA864829 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3788790 3788790 PRJNA864829_S_NODE_5343_length_257_cov_2.307692_g5257_i0 PRJNA864829 5343 257 2.307692 5.93076844 Thermoproteati 1783275 Archaea Archaea 424 4.3e-114   NTclustered gi|325984409|gb|JF262306.1| 29281 g5257 i0 99.569 90.2062256809339 232 1 90 0 26 257 1016 1247 Uncultured crenarchaeote clone YLA171 16S ribosomal RNA gene, partial sequence blastn 23183 424 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
19088395 19088395 PRJNA864829_S_NODE_935_length_494_cov_7.424719_g849_i0 PRJNA864829 935 494 7.424719 36.67811186 Thermoproteati 1783275 Archaea Archaea 872 0   NTclustered gi|29468636|gb|AY157662.1| 29281 g849 i0 100 95.5566801619433 472 0 96 0 23 494 255 726 Uncultured crenarchaeote clone VI96e1a 16S ribosomal RNA gene, partial sequence blastn 47205 872 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
20363236 20363236 PRJNA864829_S_NODE_4276_length_280_cov_2.060606_g4190_i0 PRJNA864829 4276 280 2.060606 5.7696968 Thermoproteati 1783275 Archaea Archaea 472 1.6699999999999998e-128   NTclustered gi|22797874|emb|AJ496176.1| 29281 g4190 i0 100 20.7071428571429 255 0 91 0 26 280 7089 7343 Uncultured crenarchaeote 34 kb genomic fragment blastn 5798 472 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;