RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA864829" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA864829 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3398001 3398001 PRJNA864829_S_NODE_13503_length_175_cov_1.047619_g13417_i0 PRJNA864829 13503 175 1.047619 1.83333325 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 93.5 8.69e-15   NTclustered gi|2579156136|gb|OR459835.1| 5763 g13417 i0 83.333 9.54285714285714 102 16 58 1 53 154 1729 1829 Naegleria fowleri isolate TW mitochondrion, complete genome blastn 1670 93.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
18698628 18698628 PRJNA864829_S_NODE_4275_length_280_cov_2.090909_g4189_i0 PRJNA864829 4275 280 2.090909 5.8545452 Neovahlkampfia damariscottae 166956 Heterolobosea other_Eukaryota 176 1.47e-39   NTclustered gi|2877467367|gb|PQ835000.1| 166956 g4189 i0 81.614 24.8964285714286 223 32 78 8 45 262 15952 16170 Neovahlkampfia damariscottae strain CCAP:1588/7 mitochondrion, complete genome blastn 6971 176 1 Eukaryota Discoba   Heterolobosea     Neovahlkampfiidae Neovahlkampfia Neovahlkampfia damariscottae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;