RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA864829" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA864829 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4675729 4675729 PRJNA864829_S_NODE_404_length_673_cov_12.221154_g336_i0 PRJNA864829 404 673 12.221154 82.24836642 Haplosporida sp. 2651821 SAR_Eukaryotes SAR_Eukaryotes 102 6.57e-17   NTclustered gi|1830680059|gb|MT334478.1| 2651821 g336 i0 86.957 13.0118870728083 92 11 14 1 44 134 555 464 Haplosporida sp. isolate Water_P3Pool_Feb small subunit ribosomal RNA gene, partial sequence blastn 8757 102 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida     Haplosporida sp.
13990764 13990764 PRJNA864829_S_NODE_7751_length_222_cov_1.439306_g7665_i0 PRJNA864829 7751 222 1.439306 3.19525932 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 99 2.49e-16   NTclustered gi|605052146|gb|KJ150290.1| 1483711 g7665 i0 80 32.3468468468468 140 23 62 3 1 137 3887 3750 Spongospora sp. HH-2014 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7181 99 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Spongospora Spongospora sp. HH-2014
18698591 18698591 PRJNA864829_S_NODE_1155_length_452_cov_6.233251_g1069_i0 PRJNA864829 1155 452 6.233251 28.17429452 Spongospora subterranea 70186 SAR_Eukaryotes SAR_Eukaryotes 261 6.69e-65   NTclustered gi|1150151083|ref|NC_034004.1| 70186 g1069 i0 79.082 38.6216814159292 392 73 87 7 60 451 20630 20248 Spongospora subterranea mitochondrion, complete genome blastn 17457 261 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Spongospora Spongospora subterranea
27655587 27655587 PRJNA864829_S_NODE_4824_length_268_cov_1.716895_g4738_i0 PRJNA864829 4824 268 1.716895 4.6012786 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 127 1.83e-33   NR CEP01219.1 37360 g4738 i0 69.4 1.83582089552239 85 20 88.4 1 1 237 233 317 CEP01219.1 hypothetical protein PBRA_001825 [Plasmodiophora brassicae] diamond 492 127 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;