RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA864829" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA864829 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2122639 2122639 PRJNA864829_S_NODE_1502_length_411_cov_2.071823_g1416_i0 PRJNA864829 1502 411 2.071823 8.51519253 Nephromyces sp. ex Molgula occidentalis 2544991 SAR_Eukaryotes SAR_Eukaryotes 169 3.76e-37   NTclustered gi|1735073328|gb|MK573206.1| 2544991 g1416 i0 79.508 33.5839416058394 244 44 58 4 47 286 29142 29383 Nephromyces sp. ex Molgula occidentalis isolate 656 apicoplast, complete genome blastn 13803 169 1 Eukaryota Sar   Apicomplexa Aconoidasida Nephromycida   Nephromyces Nephromyces sp. ex Molgula occidentalis
7614901 7614901 PRJNA864829_S_NODE_2286_length_348_cov_2.809365_g2200_i0 PRJNA864829 2286 348 2.809365 9.7765902 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 62.1 5.48e-5   NTclustered gi|7002|emb|X64341.1| 5807 g2200 i0 100 9.48275862068965 33 0 9 0 1 33 594 562 C.parvum ribosomal RNA gene for 18S rRNA (pCPA931) blastn 3300 62.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum
27339747 27339747 PRJNA864829_S_NODE_2543_length_336_cov_2.508711_g2457_i0 PRJNA864829 2543 336 2.508711 8.42926896 Cryptosporidium ryanae 515981 SAR_Eukaryotes SAR_Eukaryotes 59.3 3.13e-8   NR XP_067198701.1 515981 g2457 i0 53.8 1.39285714285714 52 24 46.4 0 8 163 101 152 XP_067198701.1 uncharacterized protein FG386_003659 [Cryptosporidium ryanae] diamond 468 59.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ryanae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;