contig_metadata
5 rows where bioproject = "PRJNA864829", tax_clade = "Sar" and tax_phylum = "Oomycota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4675756 | 4675756 | PRJNA864829_S_NODE_9124_length_207_cov_2.132911_g9038_i0 | PRJNA864829 | 9124 | 207 | 2.132911 | 4.41512577 | Plasmopara halstedii | 4781 | SAR_Eukaryotes | SAR_Eukaryotes | 75 | 3.87e-9 | NTclustered | gi|2248513440|ref|NC_063805.1| | 4781 | g9038 | i0 | 78.448 | 31.6859903381643 | 116 | 23 | 56 | 2 | 70 | 184 | 1516 | 1402 | Plasmopara halstedii isolate 710 mitochondrion, complete genome | blastn | 6559 | 75 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Plasmopara | Plasmopara halstedii | ||
| 11440650 | 11440650 | PRJNA864829_S_NODE_7989_length_219_cov_0.952941_g7903_i0 | PRJNA864829 | 7989 | 219 | 0.952941 | 2.08694079 | Phytophthora | 4783 | SAR_Eukaryotes | SAR_Eukaryotes | 99 | 2.45e-16 | NTclustered | gi|189084943|gb|BT032475.1| | 4784 | g7903 | i0 | 92.647 | 1.24200913242009 | 68 | 5 | 31 | 0 | 1 | 68 | 169 | 236 | Phytophthora capsici clone CBOU173-K10 mRNA sequence | blastn | 272 | 99 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora capsici | ||
| 12326425 | 12326425 | PRJNA864829_S_NODE_2710_length_327_cov_34.406475_g2624_i0 | PRJNA864829 | 2710 | 327 | 34.406475 | 112.50917325 | Globisporangium camurandrum | 657222 | SAR_Eukaryotes | SAR_Eukaryotes | 158 | 6.33e-34 | NTclustered | gi|291280812|gb|GQ244426.2| | 657222 | g2624 | i0 | 76.418 | 35.9327217125382 | 335 | 54 | 100 | 15 | 1 | 327 | 1321 | 1004 | Pythium camurandrum strain DAOM BR876 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence | blastn | 11750 | 158 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Pythiales | Pythiaceae | Globisporangium | Globisporangium camurandrum | ||
| 15264780 | 15264780 | PRJNA864829_S_NODE_4932_length_266_cov_1.110599_g4846_i0 | PRJNA864829 | 4932 | 266 | 1.110599 | 2.95419334 | Peronosporaceae | 4777 | SAR_Eukaryotes | SAR_Eukaryotes | 134 | 8.45e-27 | NTclustered | gi|2308292407|gb|OK574296.1| | 129350 | g4846 | i0 | 82.692 | 59.7631578947368 | 156 | 21 | 58 | 6 | 67 | 220 | 26910 | 27061 | Phytophthora colocasiae voucher Fj20_1 mitochondrion, complete genome | blastn | 15897 | 135 | 0.992592592592593 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora colocasiae | ||
| 21249445 | 21249445 | PRJNA864829_S_NODE_3457_length_301_cov_2.765873_g3371_i0 | PRJNA864829 | 3457 | 301 | 2.765873 | 8.32527773 | Peronosclerospora sorghi | 230839 | SAR_Eukaryotes | SAR_Eukaryotes | 207 | 5.65e-49 | NTclustered | gi|2431515601|ref|NC_070108.1| | 230839 | g3371 | i0 | 84.404 | 67.8671096345515 | 218 | 26 | 71 | 8 | 65 | 277 | 779 | 565 | Peronosclerospora sorghi isolate P6 mitochondrion, complete genome | blastn | 20428 | 207 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Peronosclerospora | Peronosclerospora sorghi |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;