RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA864829", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA864829 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11051042 11051042 PRJNA864829_S_NODE_8509_length_213_cov_5.121951_g8423_i0 PRJNA864829 8509 213 5.121951 10.90975563 Pseudosincirra longicirrata 2876852 SAR_Eukaryotes SAR_Eukaryotes 121 5.069999999999999e-23   NTclustered gi|2283605183|gb|OP175938.1| 2876852 g8423 i0 94.805 36.0610328638498 77 4 36 0 1 77 1232 1308 Pseudosincirra longicirrata isolate GQ2018091202 large subunit ribosomal RNA gene, partial sequence blastn 7681 121 1 Eukaryota Sar   Ciliophora Spirotrichea Urostylida Urostylidae Pseudosincirra Pseudosincirra longicirrata
15264769 15264769 PRJNA864829_S_NODE_12532_length_181_cov_1.219697_g12446_i0 PRJNA864829 12532 181 1.219697 2.20765157 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 329 6.340000000000001e-86   NTclustered gi|111035905|emb|AJ781081.1| 5908 g12446 i0 99.448 99.9889502762431 181 1 100 0 1 181 321 141 Tetrahymena pyriformis partial 18S rRNA gene, strain CCAP 1630/1W blastn 18098 329 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
17425480 17425480 PRJNA864829_S_NODE_5554_length_253_cov_4.406863_g5468_i0 PRJNA864829 5554 253 4.406863 11.14936339 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 468 1.92e-127   NTclustered gi|10782|emb|X54004.1| 5908 g5468 i0 100 72.9486166007905 253 0 100 0 1 253 2959 3211 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 18456 468 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
19088388 19088388 PRJNA864829_S_NODE_6575_length_238_cov_1.661376_g6489_i0 PRJNA864829 6575 238 1.661376 3.95407488 Anteclevelandella 2917660 SAR_Eukaryotes SAR_Eukaryotes 145 3.43e-30   NTclustered gi|2506798598|gb|OQ993418.1| 1324583 g6489 i0 92.157 41.7142857142857 102 8 43 0 89 190 495 394 Anteclevelandella constricta isolate P136_SRU_CA internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9928 145 1 Eukaryota Sar   Ciliophora Armophorea Clevelandellida Clevelandellidae Anteclevelandella Anteclevelandella constricta
21249446 21249446 PRJNA864829_S_NODE_4577_length_273_cov_3.553571_g4491_i0 PRJNA864829 4577 273 3.553571 9.70124883 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 499 7.45e-137   NTclustered gi|111035921|emb|AJ781306.1| 5908 g4491 i0 99.634 99.5091575091575 273 1 100 0 1 273 48 320 Tetrahymena pyriformis partial 23S rRNA gene, strain CCAP 1630/1W blastn 27166 499 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
21638900 21638900 PRJNA864829_S_NODE_12937_length_178_cov_2.069767_g12851_i0 PRJNA864829 12937 178 2.069767 3.68418526 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 329 6.21e-86   NTclustered gi|166083588|gb|EF024111.1| 404701 g12851 i0 100 100.134831460674 178 0 100 0 1 178 1578 1401 Prorodontidae environmental sample clone Elev_18S_409 18S ribosomal RNA gene, partial sequence blastn 17824 329 1 Eukaryota Sar   Ciliophora Prostomatea Prorodontida     Prorodontidae environmental sample

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;