RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA864829", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA864829 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4675701 4675701 PRJNA864829_S_NODE_1324_length_430_cov_9.561680_g1238_i0 PRJNA864829 1324 430 9.56168 41.115224 Auricula intermedia 2507965 SAR_Eukaryotes SAR_Eukaryotes 294 6.24e-75   NTclustered gi|1561426008|gb|MK426842.1| 2507965 g1238 i0 88.259 57.7418604651163 247 28 57 1 1 247 477 232 Auricula intermedia strain 1AI60805A small subunit ribosomal RNA gene, partial sequence blastn 24829 294 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Surirellales Auriculaceae Auricula Auricula intermedia
15264782 15264782 PRJNA864829_S_NODE_5872_length_248_cov_9.552764_g5786_i0 PRJNA864829 5872 248 9.552764 23.69085472 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 217 7.52e-52   NTclustered gi|56483685|gb|AY684967.1| 216763 g5786 i0 84.956 90.3387096774194 226 21 90 11 1 224 922 708 Skeletonema subsalsum strain CCAP1077/8 clone J 18S small subunit ribosomal RNA gene, partial sequence blastn 22404 219 0.990867579908676 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema subsalsum
16149997 16149997 PRJNA864829_S_NODE_793_length_525_cov_3.436975_g709_i0 PRJNA864829 793 525 3.436975 18.04411875 Guinardia delicatula 1244696 SAR_Eukaryotes SAR_Eukaryotes 122 3.87e-23   NTclustered gi|2074156200|gb|MW413905.1| 216802 g709 i0 74.303 25.392380952381 323 67 60 14 102 418 24467 24779 Guinardia delicatula mitochondrion, complete genome blastn 13331 122 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Guinardia Guinardia delicatula
19973868 19973868 PRJNA864829_S_NODE_12356_length_182_cov_1.616541_g12270_i0 PRJNA864829 12356 182 1.616541 2.94210462 Guinardia striata 1514137 SAR_Eukaryotes SAR_Eukaryotes 174 3.17e-39   NTclustered gi|2074156236|gb|MW413904.1| 1514137 g12270 i0 84.066 85.2582417582418 182 27 99 2 1 181 32333 32153 Guinardia striata mitochondrion, complete genome blastn 15517 174 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Guinardia Guinardia striata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;