RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA864829" and tax_clade = "Haptista"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA864829 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2122647 2122647 PRJNA864829_S_NODE_2942_length_319_cov_1.862963_g2856_i0 PRJNA864829 2942 319 1.862963 5.94285197 Haptophyta environmental samples 171259 Haptophyta other_Eukaryota 102 2.93e-17   NTclustered gi|269313890|gb|FJ788040.1| 171259 g2856 i0 88.235 8.81191222570533 85 10 27 0 235 319 130 214 Uncultured haptophyte clone S2C2_134 28S ribosomal RNA gene, partial sequence blastn 2811 102 1 Eukaryota Haptista   Haptophyta         Haptophyta environmental samples
11051034 11051034 PRJNA864829_S_NODE_5969_length_247_cov_1.707071_g5883_i0 PRJNA864829 5969 247 1.707071 4.21646537 Diacronema viridis 2793420 Haptophyta other_Eukaryota 78.7 3.68e-10   NTclustered gi|1941799838|gb|MW044630.1| 2793420 g5883 i0 95.833 3.68421052631579 48 2 19 0 157 204 26628 26675 Diacronema viridis mitochondrion, complete genome blastn 910 78.7 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema viridis
12326448 12326448 PRJNA864829_S_NODE_7890_length_220_cov_1.625731_g7804_i0 PRJNA864829 7890 220 1.625731 3.5766082 Chrysochromulina sp. NIES-1333 407208 Haptophyta other_Eukaryota 52.8 0.019   NTclustered gi|657188689|dbj|AB930144.1| 407208 g7804 i0 100 0.127272727272727 28 0 13 0 25 52 30403 30376 Chrysochromulina sp. NIES-1333 mitochondrial DNA, complete genome, strain: NIES-1333 blastn 28 52.8 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina sp. NIES-1333
29462869 29462869 PRJNA864829_S_NODE_8150_length_217_cov_1.916667_g8064_i0 PRJNA864829 8150 217 1.916667 4.15916739 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 107 1.45e-25   NR KAL1504257.1 97485 g8064 i0 68.6 2.93087557603687 70 22 96.8 0 2 211 303 372 KAL1504257.1 hypothetical protein AB1Y20_010666 [Prymnesium parvum] diamond 636 108 0.990740740740741 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;