RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA864829" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 6 ✖

bioproject 1

  • PRJNA864829 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3398001 3398001 PRJNA864829_S_NODE_13503_length_175_cov_1.047619_g13417_i0 PRJNA864829 13503 175 1.047619 1.83333325 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 93.5 8.69e-15   NTclustered gi|2579156136|gb|OR459835.1| 5763 g13417 i0 83.333 9.54285714285714 102 16 58 1 53 154 1729 1829 Naegleria fowleri isolate TW mitochondrion, complete genome blastn 1670 93.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
5950607 5950607 PRJNA864829_S_NODE_8645_length_212_cov_1.674847_g8559_i0 PRJNA864829 8645 212 1.674847 3.55067564 Decastava edaphica 1732396 Euglenozoa other_Eukaryota 368 1.63e-97   NTclustered gi|937541987|gb|KP306753.1| 1732396 g8559 i0 98.113 43.5990566037736 212 3 100 1 1 212 431 221 Decastava edaphica strain CCAP 1265/2 18S ribosomal RNA gene, partial sequence blastn 9243 368 1 Eukaryota Discoba   Euglenozoa Euglenida     Decastava Decastava edaphica
13600962 13600962 PRJNA864829_S_NODE_2791_length_324_cov_6.483636_g2705_i0 PRJNA864829 2791 324 6.483636 21.00698064 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 529 1.1499999999999999e-145   NTclustered gi|68271543|gb|DQ086724.1| 127150 g2705 i0 99.317 146.932098765432 293 1 90 1 7 299 654 363 Rhynchomonas nasuta isolate RHYNCHO large subunit ribosomal RNA gene, partial sequence blastn 47606 529 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
15264775 15264775 PRJNA864829_S_NODE_2112_length_359_cov_2.974194_g2026_i0 PRJNA864829 2112 359 2.974194 10.67735646 Rhynchomonas 127149 Euglenozoa other_Eukaryota 617 2.67e-172   NTclustered gi|1996609220|gb|MW694339.1| 127150 g2026 i0 100 94.033426183844 334 0 93 0 1 334 351 18 Rhynchomonas nasuta isolate G431 small subunit ribosomal RNA gene, partial sequence blastn 33758 617 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
17814336 17814336 PRJNA864829_S_NODE_6254_length_243_cov_1.365979_g6168_i0 PRJNA864829 6254 243 1.365979 3.31932897 Leishmania 5658 Euglenozoa other_Eukaryota 185 2.0699999999999998e-42   NTclustered gi|2593250474|emb|OY748421.1| 5660 g6168 i0 97.248 56.6995884773663 109 3 45 0 1 109 990997 990889 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 27 blastn 13778 185 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
18698628 18698628 PRJNA864829_S_NODE_4275_length_280_cov_2.090909_g4189_i0 PRJNA864829 4275 280 2.090909 5.8545452 Neovahlkampfia damariscottae 166956 Heterolobosea other_Eukaryota 176 1.47e-39   NTclustered gi|2877467367|gb|PQ835000.1| 166956 g4189 i0 81.614 24.8964285714286 223 32 78 8 45 262 15952 16170 Neovahlkampfia damariscottae strain CCAP:1588/7 mitochondrion, complete genome blastn 6971 176 1 Eukaryota Discoba   Heterolobosea     Neovahlkampfiidae Neovahlkampfia Neovahlkampfia damariscottae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;