RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA864829", tax_clade = "Candidatus Thermofonsia Clade 3" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Candidatus Thermofonsia Clade 3 · 4 ✖

bioproject 1

  • PRJNA864829 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3398020 3398020 PRJNA864829_S_NODE_3923_length_288_cov_1.820084_g3837_i0 PRJNA864829 3923 288 1.820084 5.24184192 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 252 2.45e-62   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g3837 i0 82.414 12.2881944444444 290 49 100 1 1 288 3495078 3495367 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 3539 252 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
4675703 4675703 PRJNA864829_S_NODE_13504_length_175_cov_1.015873_g13418_i0 PRJNA864829 13504 175 1.015873 1.77777775 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 167 5.05e-37   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g13418 i0 84.091 84.1371428571429 176 25 99 3 1 174 3494884 3495058 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 14724 167 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
18698632 18698632 PRJNA864829_S_NODE_5055_length_263_cov_1.789720_g4969_i0 PRJNA864829 5055 263 1.78972 4.7069636 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 219 2.24e-52   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g4969 i0 84.188 10.2965779467681 234 28 89 5 26 259 3495543 3495767 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 2708 219 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
25073391 25073391 PRJNA864829_S_NODE_700_length_550_cov_4.163673_g617_i0 PRJNA864829 700 550 4.163673 22.9002015 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 407 1e-108   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g617 i0 80.791 92.3 531 92 95 10 1 525 3494941 3494415 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 50765 407 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;