RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA864829", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA864829 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2122657 2122657 PRJNA864829_S_NODE_4222_length_281_cov_2.008621_g4136_i0 PRJNA864829 4222 281 2.008621 5.64422501 Paravannella minima 1443144 Discosea other_Eukaryota 520 5.909999999999999e-143   NTclustered gi|571331048|gb|KF895375.1| 1443144 g4136 i0 100 97.3487544483986 281 0 100 0 1 281 429 149 Paravannella minima strain CCAP 1533/1 18S ribosomal RNA gene, partial sequence blastn 27355 520 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
3398024 3398024 PRJNA864829_S_NODE_4483_length_275_cov_3.004425_g4397_i0 PRJNA864829 4483 275 3.004425 8.26216875 Paravannella minima 1443144 Discosea other_Eukaryota 462 9.85e-126   NTclustered gi|571331048|gb|KF895375.1| 1443144 g4397 i0 100 12.4290909090909 250 0 91 0 26 275 644 893 Paravannella minima strain CCAP 1533/1 18S ribosomal RNA gene, partial sequence blastn 3418 462 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
13600972 13600972 PRJNA864829_S_NODE_3671_length_295_cov_1.077236_g3585_i0 PRJNA864829 3671 295 1.077236 3.1778462 Vannella sp. 1973054 Discosea other_Eukaryota 510 3.76e-140   NTclustered gi|2806326588|gb|PQ345838.1| 1973054 g3585 i0 97.966 90.3491525423729 295 5 100 1 1 295 388 95 Vannella sp. isolate 346_1c small subunit ribosomal RNA gene, partial sequence blastn 26653 510 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp.
29107869 29107869 PRJNA864829_S_NODE_5408_length_256_cov_1.594203_g5322_i0 PRJNA864829 5408 256 1.594203 4.08115968 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.1 0.00604   NR XP_004352489.1 1257118 g5322 i0 38 1.640625 71 39 80.9 2 45 251 184 251 XP_004352489.1 uncharacterized protein ACA1_360270 [Acanthamoeba castellanii str. Neff] diamond 420 45.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;