RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA861969", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA861969 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1236369 1236369 PRJNA861969_P_NODE_14521_length_347_cov_0.843066_g14290_i0 PRJNA861969 14521 347 0.843066 2.92543902 root 1 Root_unresolved Root_unresolved 641 1.5299999999999996e-179   NTclustered gi|1226876681|gb|CP022559.1| 197 g14290 i0 100 100 347 0 100 0 1 347 698720 698374 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 34700 641 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
13600131 13600131 PRJNA861969_P_NODE_31791_length_250_cov_0.870056_g31560_i0 PRJNA861969 31791 250 0.870056 2.17514 Campylobacter rectus 203 Bacteria Bacteria 396 9.079999999999996e-106   NTclustered gi|1622745323|gb|CP012543.1| 203 g31560 i0 95.2 10.4 250 12 100 0 1 250 1971377 1971626 Campylobacter rectus strain ATCC 33238, complete genome blastn 2600 396 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
21248425 21248425 PRJNA861969_P_NODE_24397_length_278_cov_1.502439_g24166_i0 PRJNA861969 24397 278 1.502439 4.17678042 Campylobacter concisus 199 Bacteria Bacteria 503 5.88e-138   NTclustered gi|930358546|gb|CP012541.1| 199 g24166 i0 99.281 14.7913669064748 278 2 100 0 1 278 1821890 1822167 Campylobacter concisus strain ATCC 33237 chromosome, complete genome blastn 4112 503 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
32521514 32521514 PRJNA861969_P_NODE_22979_length_285_cov_1.070755_g22748_i0 PRJNA861969 22979 285 1.070755 3.05165175 Helicobacter pylori 210 Bacteria Bacteria 62.4 3.45e-10   NR GAA6860517.1 210 g22748 i0 60.5 1.28421052631579 76 25 80 2 230 3 4 74 GAA6860517.1 hypothetical protein Kyoto206A_1350 [Helicobacter pylori] diamond 366 62.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;