RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA861969" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 9 ✖

bioproject 1

  • PRJNA861969 · 9 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3788214 3788214 PRJNA861969_P_NODE_10743_length_395_cov_1.577640_g10512_i0 PRJNA861969 10743 395 1.57764 6.231678 root 1 Root_unresolved Root_unresolved 719 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g10512 i0 99.494 100.005063291139 395 2 100 0 1 395 1916 2310 Moloney murine leukemia virus, complete genome blastn 39502 719 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
3788406 3788406 PRJNA861969_P_NODE_7323_length_475_cov_2.179104_g7092_i0 PRJNA861969 7323 475 2.179104 10.350744 root 1 Root_unresolved Root_unresolved 861 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g7092 i0 99.368 99.88 475 3 100 0 1 475 2802 2328 Moloney murine leukemia virus, complete genome blastn 47443 861 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
3788414 3788414 PRJNA861969_P_NODE_8503_length_442_cov_1.626016_g8272_i0 PRJNA861969 8503 442 1.626016 7.18699072 root 1 Root_unresolved Root_unresolved 802 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g8272 i0 99.324 97.2941176470588 444 1 100 1 1 442 1668 1225 Moloney murine leukemia virus, complete genome blastn 43004 802 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
5064620 5064620 PRJNA861969_P_NODE_9464_length_420_cov_1.308357_g9233_i0 PRJNA861969 9464 420 1.308357 5.4950994 root 1 Root_unresolved Root_unresolved 771 0   NTclustered gi|1431162561|gb|EU075330.2| 11786 g9233 i0 99.762 97.1380952380952 420 1 100 0 1 420 5096 5515 Mutant Murine leukemia virus clone 4-6w_c7 gag-pro-pol polyprotein gene, complete cds blastn 40798 771 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
7224882 7224882 PRJNA861969_P_NODE_866_length_1532_cov_16.404387_g740_i0 PRJNA861969 866 1532 16.404387 251.31520884 Gammaretrovirus murleu 3428959 Viruses Viruses 2630 0   NTclustered gi|1167936838|gb|KY574516.1| 11786 g740 i0 97.65 99.943864229765 1532 36 100 0 1 1532 4122 5653 Murine leukemia virus isolate M965-Akv1-MCF, complete genome blastn 153114 2630 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
8499449 8499449 PRJNA861969_P_NODE_367_length_2867_cov_10.021475_g256_i2 PRJNA861969 367 2867 10.021475 287.31568825 Gammaretrovirus murleu 3428959 Viruses Viruses 4881 0   NTclustered gi|86651892|gb|DQ366149.1| 11786 g256 i2 97.45 99.9630275549355 2863 72 99 1 1 2862 1455 4317 Murine leukemia virus isolate NeRV, complete genome blastn 286594 4881 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
12716095 12716095 PRJNA861969_P_NODE_5490_length_550_cov_1.358491_g5260_i0 PRJNA861969 5490 550 1.358491 7.4717005 root 1 Root_unresolved Root_unresolved 1005 0   NTclustered gi|1431162561|gb|EU075330.2| 11786 g5260 i0 99.636 99.7345454545455 550 2 100 0 1 550 3656 4205 Mutant Murine leukemia virus clone 4-6w_c7 gag-pro-pol polyprotein gene, complete cds blastn 54854 1005 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
17813968 17813968 PRJNA861969_P_NODE_3654_length_687_cov_1.638436_g3433_i0 PRJNA861969 3654 687 1.638436 11.25605532 root 1 Root_unresolved Root_unresolved 1264 0   NTclustered gi|156153243|gb|EU075331.1| 11786 g3433 i0 99.854 27.0305676855895 687 1 100 0 1 687 3890 4576 Mutant Murine leukemia virus clone 4-6w_c20 gag-pro-pol polyprotein gene, complete cds blastn 18570 1269 0.996059889676911 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
19973124 19973124 PRJNA861969_P_NODE_3716_length_680_cov_5.426689_g3495_i0 PRJNA861969 3716 680 5.426689 36.9014852 Gammaretrovirus murleu 3428959 Viruses Viruses 1251 0   NTclustered gi|1167936572|gb|KY574505.1| 11786 g3495 i0 99.853 99.7294117647059 680 1 100 0 1 680 653 1332 Murine leukemia virus isolate AKR-L3, complete genome blastn 67816 1251 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;