RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA861969" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA861969 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3397325 3397325 PRJNA861969_P_NODE_39363_length_243_cov_0.905882_g39132_i0 PRJNA861969 39363 243 0.905882 2.20129326 Cetobacterium somerae 188913 Bacteria Bacteria 357 4.1399999999999997e-94   NTclustered gi|2666488225|gb|CP143319.1| 188913 g39132 i0 93.361 6.93415637860082 241 16 99 0 1 241 1054409 1054649 Cetobacterium somerae strain ceto chromosome, complete genome blastn 1685 357 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
12325598 12325598 PRJNA861969_P_NODE_31970_length_250_cov_0.870056_g31739_i0 PRJNA861969 31970 250 0.870056 2.17514 Fusobacterium polymorphum 76857 Bacteria Bacteria 462 8.83e-126   NTclustered gi|2706424020|gb|CP077136.1| 76857 g31739 i0 100 36.52 250 0 100 0 1 250 2351092 2351341 Fusobacterium polymorphum strain KCOM3036 chromosome, complete genome blastn 9130 462 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
16149020 16149020 PRJNA861969_P_NODE_25273_length_274_cov_1.532338_g25042_i0 PRJNA861969 25273 274 1.532338 4.19860612 Leptotrichia sp. SK-5 3075818 Bacteria Bacteria 501 2.08e-137   NTclustered gi|2899356158|dbj|AP028931.1| 3075818 g25042 i0 99.635 6.77372262773723 274 1 100 0 1 274 796001 796274 Leptotrichia sp. SK-5 DNA, complete genome blastn 1856 501 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. SK-5
22523044 22523044 PRJNA861969_P_NODE_25278_length_274_cov_1.532338_g25047_i0 PRJNA861969 25278 274 1.532338 4.19860612 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 484 2.0899999999999994e-132   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g25047 i0 98.54 8.98905109489051 274 4 100 0 1 274 1015663 1015936 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 2463 484 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;