RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA861969", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA861969 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
846434 846434 PRJNA861969_P_NODE_32841_length_249_cov_0.875000_g32610_i0 PRJNA861969 32841 249 0.875 2.17875 Prosthecobacter sp. 1965333 Bacteria Bacteria 171 2.67e-47   NR WP_395734942.1 1965333 g32610 i0 100 2.96385542168675 82 0 98.8 0 3 248 756 837 WP_395734942.1 efflux RND transporter permease subunit, partial [Prosthecobacter sp.] diamond 738 171 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
8499078 8499078 PRJNA861969_P_NODE_16287_length_331_cov_0.895349_g16056_i0 PRJNA861969 16287 331 0.895349 2.96360519 Chthoniobacter flavus 191863 Bacteria Bacteria 494 4.31e-135   NTclustered gi|183579828|emb|AM905425.1| 497964 g16056 i0 93.656 256.253776435045 331 19 100 2 1 331 2227 1899 Chthoniobacter flavus 23S rRNA gene, strain Ellin428 blastn 84820 494 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
13600151 13600151 PRJNA861969_P_NODE_33091_length_249_cov_0.875000_g32860_i0 PRJNA861969 33091 249 0.875 2.17875 Prosthecobacter sp. 1965333 Bacteria Bacteria 159 2.66e-43   NR WP_397385698.1 1965333 g32860 i0 98.8 3.95180722891566 82 1 98.8 0 2 247 345 426 WP_397385698.1 response regulator, partial [Prosthecobacter sp.] diamond 984 159 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
32458081 32458081 PRJNA861969_P_NODE_27319_length_265_cov_1.234375_g27088_i0 PRJNA861969 27319 265 1.234375 3.27109375 Prosthecobacter dejongeii 48465 Bacteria Bacteria 117 6.2899999999999995e-30   NR WP_184211288.1 48465 g27088 i0 84.1 0.781132075471698 69 11 78.1 0 264 58 235 303 WP_184211288.1 DUF58 domain-containing protein [Prosthecobacter dejongeii] diamond 207 117 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter dejongeii
32584599 32584599 PRJNA861969_P_NODE_28119_length_261_cov_1.755319_g27888_i0 PRJNA861969 28119 261 1.755319 4.58138259 Prosthecobacter sp. 1965333 Bacteria Bacteria 51.2 4.95e-5   NR WP_294231802.1 1965333 g27888 i0 50 0.804597701149425 70 28 74.7 2 221 27 9083 9150 WP_294231802.1 autotransporter-associated beta strand repeat-containing protein [Prosthecobacter sp.] diamond 210 51.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
32710269 32710269 PRJNA861969_P_NODE_38880_length_243_cov_1.811765_g38649_i0 PRJNA861969 38880 243 1.811765 4.40258895 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 132 4e-36   NR MBS0661148.1 2026799 g38649 i0 76.3 2.96296296296296 80 19 98.8 0 3 242 60 139 MBS0661148.1 glucose 1-dehydrogenase [Verrucomicrobiota bacterium] diamond 720 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;