RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA861969", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA861969 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
846450 846450 PRJNA861969_P_NODE_33781_length_248_cov_0.880000_g33550_i0 PRJNA861969 33781 248 0.88 2.1824 Gemmata massiliana 1210884 Bacteria Bacteria 265 2.6499999999999997e-66   NTclustered gi|1804905141|emb|LR593886.1| 1210884 g33550 i0 85.944 1.00403225806452 249 33 100 2 1 248 4104838 4104591 Gemmata massiliana isolate Soil9 genome assembly, chromosome: 1 blastn 249 265 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata massiliana
23798674 23798674 PRJNA861969_P_NODE_33059_length_249_cov_0.875000_g32828_i0 PRJNA861969 33059 249 0.875 2.17875 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 54.7 0.006   NTclustered gi|2874254106|emb|OY970189.1| 100233 g32828 i0 94.286 0.140562248995984 35 2 14 0 184 218 7103919 7103885 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 35 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
26960021 26960021 PRJNA861969_P_NODE_33562_length_248_cov_1.760000_g33331_i0 PRJNA861969 33562 248 1.76 4.3648 Gemmataceae bacterium 2052164 Bacteria Bacteria 151 1.69e-42   NR MFO0852601.1 2052164 g33331 i0 81.7 0.991935483870968 82 15 99.2 0 2 247 259 340 MFO0852601.1 sialidase family protein [Gemmataceae bacterium] diamond 246 151 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
28160734 28160734 PRJNA861969_P_NODE_27525_length_264_cov_1.476440_g27294_i0 PRJNA861969 27525 264 1.47644 3.8978016 Planctomycetota bacterium 2026780 Bacteria Bacteria 44.3 0.013   NR MBM4009064.1 2026780 g27294 i0 38.6 1 44 24 46.6 1 249 127 135 178 MBM4009064.1 DMT family transporter [Planctomycetota bacterium] diamond 264 44.3 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30908327 30908327 PRJNA861969_P_NODE_23114_length_284_cov_1.459716_g22883_i0 PRJNA861969 23114 284 1.459716 4.14559344 Candidatus Laterigemmans baculatus 2770505 Bacteria Bacteria 180 1.77e-52   NR WP_164101029.1 2770505 g22883 i0 96.8 1.98591549295775 94 3 99.3 0 284 3 214 307 WP_164101029.1 V-type ATP synthase subunit B [Candidatus Laterigemmans baculatus] diamond 564 180 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Candidatus Laterigemmans Candidatus Laterigemmans baculatus
30939945 30939945 PRJNA861969_P_NODE_37294_length_245_cov_0.895349_g37063_i0 PRJNA861969 37294 245 0.895349 2.19360505 Planctomycetota bacterium 2026780 Bacteria Bacteria 70.1 6.57e-13   NR MCI0332210.1 2026780 g37063 i0 47.8 0.820408163265306 67 35 82 0 1 201 84 150 MCI0332210.1 hypothetical protein [Planctomycetota bacterium] diamond 201 70.1 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32489742 32489742 PRJNA861969_P_NODE_37559_length_245_cov_0.895349_g37328_i0 PRJNA861969 37559 245 0.895349 2.19360505 Fimbriiglobus sp. 1914235 Bacteria Bacteria 92 7.42e-20   NR MCU0705219.1 1914235 g37328 i0 57.1 0.942857142857143 77 33 94.3 0 242 12 192 268 MCU0705219.1 ATP-grasp domain-containing protein [Fimbriiglobus sp.] diamond 231 92 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Fimbriiglobus Fimbriiglobus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;