RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA861969", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA861969 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4674796 4674796 PRJNA861969_P_NODE_26584_length_268_cov_1.517949_g26353_i0 PRJNA861969 26584 268 1.517949 4.06810332 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 94 1.06e-20   NR HEX9952965.1 2838334 g26353 i0 67.5 1.76865671641791 80 26 89.6 0 28 267 209 288 HEX9952965.1 Ig-like domain-containing protein [Rubricoccaceae bacterium] diamond 474 94 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
29802306 29802306 PRJNA861969_P_NODE_24611_length_277_cov_1.509804_g24380_i0 PRJNA861969 24611 277 1.509804 4.18215708 Rhodothermales bacterium 2306054 Bacteria Bacteria 160 1.9e-43   NR MEP0548892.1 2306054 g24380 i0 87 0.996389891696751 92 12 99.6 0 276 1 1841 1932 MEP0548892.1 glucoamylase family protein [Rhodothermales bacterium] diamond 276 160 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
31097615 31097615 PRJNA861969_P_NODE_27755_length_263_cov_1.336842_g27524_i0 PRJNA861969 27755 263 1.336842 3.51589446 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 53.5 6.72e-6   NR HEX8299648.1 2838334 g27524 i0 50.6 0.901140684410646 79 26 77.6 2 55 258 1 77 HEX8299648.1 uracil-DNA glycosylase [Rubricoccaceae bacterium] diamond 237 53.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
31097620 31097620 PRJNA861969_P_NODE_41435_length_241_cov_0.916667_g41204_i0 PRJNA861969 41435 241 0.916667 2.20916747 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 122 4.76e-30   NR HYE95540.1 2838334 g41204 i0 64.4 1.08298755186722 87 24 99.6 1 241 2 233 319 HYE95540.1 alpha-amylase family glycosyl hydrolase [Rubricoccaceae bacterium] diamond 261 122 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;