RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA861969" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA861969 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
846580 846580 PRJNA861969_P_NODE_39641_length_243_cov_0.905882_g39410_i0 PRJNA861969 39641 243 0.905882 2.20129326 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 136 1.59e-38   NR MBB1552445.1 2026720 g39410 i0 88.9 2 81 9 100 0 243 1 87 167 MBB1552445.1 translation elongation factor Ts [Candidatus Saccharibacteria bacterium] diamond 486 136 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
17424543 17424543 PRJNA861969_P_NODE_30134_length_252_cov_3.145251_g29903_i0 PRJNA861969 30134 252 3.145251 7.92603252 Minisyncoccota bacterium 2053589 Bacteria Bacteria 159 1.98e-45   NR HEY6019085.1 2053589 g29903 i0 91.7 8 84 7 100 0 252 1 41 124 HEY6019085.1 recombinase RecA [Candidatus Paceibacterota bacterium] diamond 2016 159 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29486413 29486413 PRJNA861969_P_NODE_29290_length_256_cov_1.683060_g29059_i0 PRJNA861969 29290 256 1.68306 4.3086336 Patescibacteria group bacterium 2052139 Bacteria Bacteria 71.6 9.62e-13   NR MES2631097.1 2052139 g29059 i0 43.5 0.99609375 85 47 98.4 1 252 1 36 120 MES2631097.1 hypothetical protein [Patescibacteria group bacterium] diamond 255 71.6 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
29581041 29581041 PRJNA861969_P_NODE_23310_length_283_cov_1.466667_g23079_i0 PRJNA861969 23310 283 1.466667 4.15066761 Candidatus Dependentiae bacterium 2030827 Bacteria Bacteria 111 4.98e-26   NR RTL04438.1 2030827 g23079 i0 69.9 0.985865724381625 93 27 97.5 1 8 283 239 331 RTL04438.1 MAG: hypothetical protein EKK58_10510 [Candidatus Dependentiae bacterium] diamond 279 111 1 Bacteria Bacteria candidate phyla             Candidatus Babelota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;