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contig_metadata

17 rows where bioproject = "PRJNA859990" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 17 ✖

bioproject 1

  • PRJNA859990 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
845899 845899 PRJNA859990_S_NODE_2341_length_603_cov_1.967925_g2085_i0 PRJNA859990 2341 603 1.967925 11.86658775 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 939 0   NTclustered gi|985614202|gb|CP010834.1| 1609968 g2085 i0 94.868 69.8789386401327 604 26 100 5 1 603 494571 495170 Methanobrevibacter sp. YE315, complete genome blastn 42137 939 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
2511589 2511589 PRJNA859990_S_NODE_15862_length_263_cov_1.531579_g15601_i0 PRJNA859990 15862 263 1.531579 4.02805277 Methanobrevibacter 2172 Archaea Archaea 335 2.129999999999999e-87   NTclustered gi|1294447101|gb|CP017803.1| 2173 g15601 i0 100 89.106463878327 181 0 69 0 11 191 266547 266367 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 23435 335 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
4674298 4674298 PRJNA859990_S_NODE_15724_length_264_cov_2.450262_g15463_i0 PRJNA859990 15724 264 2.450262 6.46869168 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 399 7.479999999999998e-107   NTclustered gi|985614202|gb|CP010834.1| 1609968 g15463 i0 93.962 96.1856060606061 265 14 100 2 1 264 496019 496282 Methanobrevibacter sp. YE315, complete genome blastn 25393 399 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
5064139 5064139 PRJNA859990_S_NODE_17304_length_253_cov_3.238889_g17043_i0 PRJNA859990 17304 253 3.238889 8.1943891699999991 Methanobacteriati 3366610 Archaea Archaea 307 4.44e-79   NTclustered gi|557923211|gb|KF607702.1| 115547 g17043 i0 99.408 66.7588932806324 169 1 67 0 11 179 181 13 Uncultured archaeon clone El_A021 16S ribosomal RNA gene, partial sequence blastn 16890 307 1 Archaea               uncultured archaeon
6339973 6339973 PRJNA859990_S_NODE_11445_length_303_cov_1.004348_g11184_i0 PRJNA859990 11445 303 1.004348 3.04317444 root 1 Root_unresolved Root_unresolved 560 3.79e-155   NTclustered gi|436492|gb|U00707.1|PSU00707 33866 g11184 i0 100 10.6105610561056 303 0 100 0 1 303 4238 3936 Pyrococcus sp. Deep Vent DNA polymerase precursor gene, complete cds blastn 3215 560 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp.
7224197 7224197 PRJNA859990_S_NODE_7926_length_355_cov_1.411348_g7665_i0 PRJNA859990 7926 355 1.411348 5.0102854 Candidatus Methanoplasma termitum 1577791 Archaea Archaea 383 1.0499999999999998e-101   NTclustered gi|731480732|gb|CP010070.1| 1577791 g7665 i0 98.611 319.047887323944 216 3 61 0 71 286 162129 162344 Candidatus Methanoplasma termitum strain MpT1, complete genome blastn 113262 383 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Candidatus Methanoplasma Candidatus Methanoplasma termitum
12715654 12715654 PRJNA859990_S_NODE_19670_length_246_cov_1.537572_g19409_i0 PRJNA859990 19670 246 1.537572 3.78242712 Methanobrevibacter 2172 Archaea Archaea 444 3.14e-120   NTclustered gi|968564921|gb|CP011266.1| 230361 g19409 i0 99.187 161.979674796748 246 2 100 0 1 246 543076 543321 Methanobrevibacter millerae strain SM9, complete genome blastn 39847 444 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
16148644 16148644 PRJNA859990_S_NODE_22753_length_233_cov_35.343750_g22492_i0 PRJNA859990 22753 233 35.34375 82.3509375 uncultured archaeon 115547 Archaea Archaea 287 5.25e-73   NTclustered gi|283837256|dbj|AB541813.1| 115547 g22492 i0 100 68.274678111588 155 0 67 0 67 221 157 3 Uncultured archaeon gene for 16S rRNA, partial sequence, clone: K09_10_51 blastn 15908 287 1 Archaea               uncultured archaeon
17813684 17813684 PRJNA859990_S_NODE_6314_length_393_cov_1.593750_g6053_i0 PRJNA859990 6314 393 1.59375 6.2634375 Methanobrevibacter 2172 Archaea Archaea 704 0   NTclustered gi|968564921|gb|CP011266.1| 230361 g6053 i0 98.982 144.534351145038 393 4 100 0 1 393 542667 542275 Methanobrevibacter millerae strain SM9, complete genome blastn 56802 704 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
19972590 19972590 PRJNA859990_S_NODE_8376_length_346_cov_3.098901_g8115_i0 PRJNA859990 8376 346 3.098901 10.72219746 uncultured Methanocorpusculum sp. 176309 Archaea Archaea 259 1.8e-64   NTclustered gi|2621786121|emb|OY782579.1| 176309 g8115 i0 89.1 332.115606936416 211 19 60 3 65 272 98154 98363 MAG: uncultured Methanocorpusculum sp. isolate 00e4b8a3-32d7-4b6d-ae68-a36d250ebca6 genome assembly, chromosome: 1 blastn 114912 259 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum uncultured Methanocorpusculum sp.
21247939 21247939 PRJNA859990_S_NODE_13097_length_286_cov_17.061033_g12836_i0 PRJNA859990 13097 286 17.061033 48.79455438 uncultured archaeon 115547 Archaea Archaea 387 6.3799999999999995e-103   NTclustered gi|283837254|dbj|AB541811.1| 115547 g12836 i0 100 74.9965034965035 209 0 73 0 67 275 211 3 Uncultured archaeon gene for 16S rRNA, partial sequence, clone: K09_10_49 blastn 21449 387 1 Archaea               uncultured archaeon
21638081 21638081 PRJNA859990_S_NODE_12997_length_287_cov_9.014019_g12736_i0 PRJNA859990 12997 287 9.014019 25.87023453 root 1 Root_unresolved Root_unresolved 296 1.11e-75   NTclustered gi|399117610|dbj|AB739345.1| 115547 g12736 i0 100 55.7491289198606 160 0 56 0 64 223 1244 1085 Uncultured archaeon gene for 16S rRNA, partial sequence, clone: HMET47 blastn 16000 296 1 Archaea               uncultured archaeon
25072152 25072152 PRJNA859990_S_NODE_8300_length_348_cov_1.469091_g8039_i0 PRJNA859990 8300 348 1.469091 5.11243668 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 204 8.599999999999999e-48   NTclustered gi|985614202|gb|CP010834.1| 1609968 g8039 i0 89.937 171.988505747126 159 15 46 1 124 282 1994660 1994503 Methanobrevibacter sp. YE315, complete genome blastn 59852 204 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
27118085 27118085 PRJNA859990_S_NODE_17082_length_255_cov_1.252747_g16821_i0 PRJNA859990 17082 255 1.252747 3.19450485 Candidatus Thorarchaeota archaeon 2053491 Archaea Archaea 93.6 3.32e-21   NR TFG98658.1 2053491 g16821 i0 54.1 1 85 38 98.8 1 3 254 14 98 TFG98658.1 MAG: hypothetical protein E4H12_05440 [Candidatus Thorarchaeota archaeon] diamond 255 93.6 1 Archaea   Promethearchaeati Candidatus Thorarchaeota         Candidatus Thorarchaeota archaeon
29273596 29273596 PRJNA859990_S_NODE_21669_length_242_cov_0.911243_g21408_i0 PRJNA859990 21669 242 0.911243 2.20520806 Thermoproteati 1783275 Archaea Archaea 46.2 0.00204   NR MBS7611509.1 2026714 g21408 i0 84.6 4.25206611570248 26 4 32.2 0 237 160 272 297 MBS7611509.1 FAD-dependent oxidoreductase [Candidatus Bathyarchaeota archaeon] diamond 1029 46.2 1 Archaea   Thermoproteati Candidatus Bathyarchaeota         Candidatus Bathyarchaeota archaeon
30623636 30623636 PRJNA859990_S_NODE_22273_length_241_cov_0.880952_g22012_i0 PRJNA859990 22273 241 0.880952 2.12309432 Candidatus Bathyarchaeia archaeon 3045160 Archaea Archaea 64.3 1.27e-10   NR HUO62002.1 3045160 g22012 i0 44 1.76763485477178 75 42 93.4 0 14 238 79 153 HUO62002.1 hypothetical protein [Candidatus Bathyarchaeia archaeon] diamond 426 64.3 1 Archaea   Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeia       Candidatus Bathyarchaeia archaeon
31888285 31888285 PRJNA859990_S_NODE_11177_length_306_cov_1.210300_g10916_i0 PRJNA859990 11177 306 1.2103 3.703518 archaeon 1906665 Archaea Archaea 97.8 3.129999999999999e-23   NR NCP98210.1 1906665 g10916 i0 55.3 0.833333333333333 85 37 83.3 1 52 306 1 84 NCP98210.1 transcription termination/antitermination protein NusG [archaeon] diamond 255 97.8 1 Archaea               archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;