RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where bioproject = "PRJNA859990", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 13 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 13 ✖

tax_kingdom 1

bioproject 1

  • PRJNA859990 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11049582 11049582 PRJNA859990_S_NODE_22209_length_241_cov_0.916667_g21948_i0 PRJNA859990 22209 241 0.916667 2.20916747 Desulfovibrio desulfuricans 876 Bacteria Bacteria 300 7.02e-77   NTclustered gi|2022650692|gb|CP072608.1| 876 g21948 i0 97.175 1.46887966804979 177 5 73 0 65 241 710465 710641 Desulfovibrio desulfuricans strain L4 chromosome, complete genome blastn 354 300 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
12325043 12325043 PRJNA859990_S_NODE_16530_length_258_cov_2.972973_g16269_i0 PRJNA859990 16530 258 2.972973 7.67027034 Geobacter sulfurreducens 35554 Bacteria Bacteria 355 1.6e-93   NTclustered gi|2045533567|gb|CP074693.1| 35554 g16269 i0 91.506 9.0077519379845 259 20 100 2 1 258 1181636 1181893 Geobacter sulfurreducens strain YM35 chromosome, complete genome blastn 2324 355 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
12715705 12715705 PRJNA859990_S_NODE_23670_length_213_cov_5.014286_g23409_i0 PRJNA859990 23670 213 5.014286 10.68042918 Geobacter 28231 Bacteria Bacteria 357 3.55e-94   NTclustered gi|779731694|gb|CP010430.1| 35554 g23409 i0 97.156 28.6572769953052 211 6 99 0 1 211 1478828 1478618 Geobacter sulfurreducens strain AM-1 genome blastn 6104 357 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
17813703 17813703 PRJNA859990_S_NODE_7534_length_363_cov_2.165517_g7273_i0 PRJNA859990 7534 363 2.165517 7.86082671 Solidesulfovibrio 2910984 Bacteria Bacteria 593 4.559999999999998e-165   NTclustered gi|470475467|ref|NR_076282.1| 184917 g7273 i0 96.154 287.796143250689 364 13 100 1 1 363 1461 1098 Desulfovibrio magneticus strain RS-1 23S ribosomal RNA gene, complete sequence blastn 104470 593 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio magneticus
19087507 19087507 PRJNA859990_S_NODE_12795_length_289_cov_1.893519_g12534_i0 PRJNA859990 12795 289 1.893519 5.47226991 Geobacter 28231 Bacteria Bacteria 435 2.27e-117   NTclustered gi|1373812086|dbj|AP017912.1| 35554 g12534 i0 93.793 9.03114186851211 290 16 100 2 1 289 3664247 3663959 Geobacter sulfurreducens DNA, complete genome blastn 2610 435 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
21638311 21638311 PRJNA859990_S_NODE_9417_length_330_cov_0.887160_g9156_i0 PRJNA859990 9417 330 0.88716 2.927628 Geobacter 28231 Bacteria Bacteria 351 2.74e-92   NTclustered gi|779731694|gb|CP010430.1| 35554 g9156 i0 90.11 7.43636363636364 273 23 82 4 59 330 2234588 2234857 Geobacter sulfurreducens strain AM-1 genome blastn 2454 351 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
23798048 23798048 PRJNA859990_S_NODE_15379_length_267_cov_1.190722_g15118_i0 PRJNA859990 15379 267 1.190722 3.17922774 Geobacter sulfurreducens 35554 Bacteria Bacteria 427 3.47e-115   NTclustered gi|1373812086|dbj|AP017912.1| 35554 g15118 i0 95.506 9 267 12 100 0 1 267 3664403 3664137 Geobacter sulfurreducens DNA, complete genome blastn 2403 427 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
25462781 25462781 PRJNA859990_S_NODE_19640_length_246_cov_1.826590_g19379_i0 PRJNA859990 19640 246 1.82659 4.4934114 Solidesulfovibrio 2910984 Bacteria Bacteria 394 3.2e-105   NTclustered gi|470475467|ref|NR_076282.1| 184917 g19379 i0 95.528 214.878048780488 246 11 100 0 1 246 1073 828 Desulfovibrio magneticus strain RS-1 23S ribosomal RNA gene, complete sequence blastn 52860 394 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio magneticus
25462872 25462872 PRJNA859990_S_NODE_6520_length_387_cov_49.079618_g6259_i0 PRJNA859990 6520 387 49.079618 189.93812166 Geobacter 28231 Bacteria Bacteria 627 4.829999999999999e-175   NTclustered gi|2499315885|dbj|AP028061.1| 1260928 g6259 i0 99.422 14.2273901808786 346 1 89 1 2 347 2127805 2128149 Geobacter sulfurreducens subsp. ethanolicus OSK2A DNA, complete genome blastn 5506 627 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
27181356 27181356 PRJNA859990_S_NODE_11002_length_308_cov_1.204255_g10741_i0 PRJNA859990 11002 308 1.204255 3.7091054 Desulfovibrio sp. 885 Bacteria Bacteria 144 2.809999999999999e-38   NR MDR2076787.1 885 g10741 i0 67.6 2.98051948051948 102 33 99.4 0 308 3 299 400 MDR2076787.1 beta-propeller fold lactonase family protein [Desulfovibrio sp.] diamond 918 144 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
28823315 28823315 PRJNA859990_S_NODE_19008_length_248_cov_0.880000_g18747_i0 PRJNA859990 19008 248 0.88 2.1824 Smithella sp. 2053614 Bacteria Bacteria 80.1 2.77e-15   NR NLA40499.1 2053614 g18747 i0 50 2.84274193548387 78 39 94.4 0 239 6 644 721 NLA40499.1 ATP-binding protein [Smithella sp.] diamond 705 80.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
29171036 29171036 PRJNA859990_S_NODE_13369_length_284_cov_1.118483_g13108_i0 PRJNA859990 13369 284 1.118483 3.17649172 Desulfobacteria bacterium 3024420 Bacteria Bacteria 124 6.119999999999999e-31   NR HEX3015954.1 3024420 g13108 i0 67.7 0.982394366197183 93 30 98.2 0 6 284 111 203 HEX3015954.1 ATP-binding protein [Desulfobacteria bacterium] diamond 279 124 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria       Desulfobacteria bacterium
29707218 29707218 PRJNA859990_S_NODE_18070_length_250_cov_1.858757_g17809_i0 PRJNA859990 18070 250 1.858757 4.6468925 Desulfovibrio sp. 885 Bacteria Bacteria 151 5.05e-42   NR MCA1943739.1 885 g17809 i0 85.5 1.992 83 12 99.6 0 1 249 95 177 MCA1943739.1 type II secretion system F family protein [Desulfovibrio sp.] diamond 498 151 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;