RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA859990" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA859990 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5064163 5064163 PRJNA859990_S_NODE_19084_length_248_cov_0.880000_g18823_i0 PRJNA859990 19084 248 0.88 2.1824 Rhodothermales 1853224 Bacteria Bacteria 342 1.1899999999999999e-89   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g18823 i0 91.566 255.879032258065 249 20 100 1 1 248 2906155 2906403 Rhodothermaceae bacterium RA chromosome, complete genome blastn 63458 342 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
6339965 6339965 PRJNA859990_S_NODE_11005_length_308_cov_1.127660_g10744_i0 PRJNA859990 11005 308 1.12766 3.4731928 Rubrivirga 1434037 Bacteria Bacteria 361 4.21e-95   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g10744 i0 88.704 205.808441558442 301 26 96 7 1 297 805368 805664 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 63389 361 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;