RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA859990" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA859990 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4674395 4674395 PRJNA859990_S_NODE_2924_length_546_cov_1.501057_g2666_i0 PRJNA859990 2924 546 1.501057 8.19577122 Sandaracinus amylolyticus 927083 Bacteria Bacteria 776 0   NTclustered gi|816953346|gb|CP011125.1| 927083 g2666 i0 93.032 129.68315018315 531 37 97 0 1 531 8616407 8615877 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 70807 776 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
23798004 23798004 PRJNA859990_S_NODE_11419_length_303_cov_1.682609_g11158_i0 PRJNA859990 11419 303 1.682609 5.09830527 Sandaracinus amylolyticus 927083 Bacteria Bacteria 414 3.12e-111   NTclustered gi|2183633570|gb|CP070225.1| 927083 g11158 i0 91.475 131.613861386139 305 20 100 4 1 303 9677675 9677375 Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence blastn 39879 414 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
25072146 25072146 PRJNA859990_S_NODE_7960_length_354_cov_2.587189_g7699_i0 PRJNA859990 7960 354 2.587189 9.15864906 Sandaracinus amylolyticus 927083 Bacteria Bacteria 510 4.6e-140   NTclustered gi|816953346|gb|CP011125.1| 927083 g7699 i0 92.655 181.194915254237 354 26 100 0 1 354 8615593 8615240 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 64143 510 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
26960014 26960014 PRJNA859990_S_NODE_12502_length_292_cov_1.278539_g12241_i0 PRJNA859990 12502 292 1.278539 3.73333388 Corallococcus exiguus 83462 Bacteria Bacteria 139 3.95e-40   NR WP_172815425.1 83462 g12241 i0 95.7 0.955479452054795 93 4 95.5 0 291 13 17 109 WP_172815425.1 hypothetical protein, partial [Corallococcus exiguus] diamond 279 139 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus exiguus
29612579 29612579 PRJNA859990_S_NODE_18310_length_250_cov_0.870056_g18049_i0 PRJNA859990 18310 250 0.870056 2.17514 Kofleriaceae bacterium 2212474 Bacteria Bacteria 43.5 0.022   NR MEZ4401366.1 2212474 g18049 i0 35.8 0.804 67 40 78 2 2 196 521 586 MEZ4401366.1 hypothetical protein [Kofleriaceae bacterium] diamond 201 43.5 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
30466138 30466138 PRJNA859990_S_NODE_18853_length_248_cov_1.594286_g18592_i0 PRJNA859990 18853 248 1.594286 3.95382928 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 47.4 9.07e-4   NR MBW2002995.1 2026735 g18592 i0 41.9 0.75 62 36 75 0 27 212 234 295 MBW2002995.1 peptidoglycan-binding protein [Deltaproteobacteria bacterium] diamond 186 47.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31413966 31413966 PRJNA859990_S_NODE_19776_length_246_cov_1.005780_g19515_i0 PRJNA859990 19776 246 1.00578 2.4742188 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 105 1.9099999999999994e-24   NR MBP1709563.1 2026735 g19515 i0 85.7 0.682926829268293 56 8 68.3 0 169 2 43 98 MBP1709563.1 rRNA methyltransferase [Deltaproteobacteria bacterium] diamond 168 105 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;