contig_metadata
10 rows where bioproject = "PRJNA859990" and tax_phylum = "Deinococcota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 845968 | 845968 | PRJNA859990_S_NODE_7701_length_360_cov_0.919861_g7440_i0 | PRJNA859990 | 7701 | 360 | 0.919861 | 3.3114996 | Deinococcus ficus | 317577 | Bacteria | Bacteria | 608 | 1.609999999999999e-169 | NTclustered | gi|1220362168|gb|CP021081.1| | 317577 | g7440 | i0 | 97.214 | 192.383333333333 | 359 | 10 | 99 | 0 | 1 | 359 | 2341435 | 2341793 | Deinococcus ficus strain CC-FR2-10, complete genome | blastn | 69258 | 608 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus ficus | ||
| 1236199 | 1236199 | PRJNA859990_S_NODE_5221_length_427_cov_1.177966_g4960_i0 | PRJNA859990 | 5221 | 427 | 1.177966 | 5.02991482 | Deinococcus | 1298 | Bacteria | Bacteria | 383 | 1.2899999999999998e-101 | NTclustered | gi|470487735|ref|NR_076834.1| | 309887 | g4960 | i0 | 83.693 | 190.983606557377 | 417 | 57 | 97 | 6 | 11 | 425 | 390 | 797 | Deinococcus maricopensis strain LB-34 23S ribosomal RNA gene, complete sequence | blastn | 81550 | 383 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus maricopensis | ||
| 2121308 | 2121308 | PRJNA859990_S_NODE_19002_length_248_cov_0.880000_g18741_i0 | PRJNA859990 | 19002 | 248 | 0.88 | 2.1824 | Deinococcus sp. VB142 | 3112952 | Bacteria | Bacteria | 448 | 2.4499999999999996e-121 | NTclustered | gi|2706837832|gb|CP149782.1| | 3112952 | g18741 | i0 | 99.194 | 3 | 248 | 2 | 100 | 0 | 1 | 248 | 525062 | 524815 | Deinococcus sp. VB142 chromosome 1, complete sequence | blastn | 744 | 448 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus sp. VB142 | ||
| 2121442 | 2121442 | PRJNA859990_S_NODE_9902_length_322_cov_1.405622_g9641_i0 | PRJNA859990 | 9902 | 322 | 1.405622 | 4.52610284 | Deinococcus sp. | 47478 | Bacteria | Bacteria | 462 | 1.18e-125 | NTclustered | gi|2498163271|gb|OQ891522.1| | 47478 | g9641 | i0 | 92.79 | 106.993788819876 | 319 | 23 | 99 | 0 | 1 | 319 | 838 | 520 | Deinococcus sp. strain SCM215 16S ribosomal RNA gene, partial sequence | blastn | 34452 | 462 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus sp. | ||
| 7614132 | 7614132 | PRJNA859990_S_NODE_20166_length_245_cov_1.180233_g19905_i0 | PRJNA859990 | 20166 | 245 | 1.180233 | 2.89157085 | Deinococcus | 1298 | Bacteria | Bacteria | 453 | 5.1900000000000006e-123 | NTclustered | gi|1735477873|gb|CP031501.1| | 1299 | g19905 | i0 | 100 | 204.718367346939 | 245 | 0 | 100 | 0 | 1 | 245 | 320769 | 320525 | Deinococcus radiodurans strain R1 dM1 chromosome II, complete sequence | blastn | 50156 | 453 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus radiodurans | ||
| 9773943 | 9773943 | PRJNA859990_S_NODE_18988_length_248_cov_0.891429_g18727_i0 | PRJNA859990 | 18988 | 248 | 0.891429 | 2.21074392 | Deinococcus sp. KNUC1210 | 2917691 | Bacteria | Bacteria | 331 | 2.57e-86 | NTclustered | gi|2197029603|gb|CP092190.1| | 2917691 | g18727 | i0 | 90.588 | 201.125 | 255 | 17 | 100 | 6 | 1 | 248 | 1427878 | 1428132 | Deinococcus sp. KNUC1210 chromosome, complete genome | blastn | 49879 | 331 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus sp. KNUC1210 | ||
| 13989842 | 13989842 | PRJNA859990_S_NODE_12211_length_295_cov_0.945946_g11950_i0 | PRJNA859990 | 12211 | 295 | 0.945946 | 2.7905407 | Truepera | 332248 | Bacteria | Bacteria | 427 | 3.8899999999999996e-115 | NTclustered | gi|470486385|ref|NR_076754.1| | 332249 | g11950 | i0 | 93.706 | 832.752542372881 | 286 | 17 | 97 | 1 | 10 | 295 | 2931 | 2647 | Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence | blastn | 245662 | 427 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Trueperales | Trueperaceae | Truepera | Truepera radiovictrix | ||
| 17813650 | 17813650 | PRJNA859990_S_NODE_4454_length_456_cov_2.451697_g4193_i0 | PRJNA859990 | 4454 | 456 | 2.451697 | 11.17973832 | Truepera | 332248 | Bacteria | Bacteria | 560 | 5.94e-155 | NTclustered | gi|470486385|ref|NR_076754.1| | 332249 | g4193 | i0 | 88.84 | 311.640350877193 | 457 | 49 | 100 | 2 | 1 | 456 | 485 | 30 | Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence | blastn | 142108 | 560 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Trueperales | Trueperaceae | Truepera | Truepera radiovictrix | ||
| 22913825 | 22913825 | PRJNA859990_S_NODE_21378_length_243_cov_0.858824_g21117_i0 | PRJNA859990 | 21378 | 243 | 0.858824 | 2.08694232 | Deinococcus sp. Arct2-2 | 2568653 | Bacteria | Bacteria | 98.6 | 1.98e-22 | NR | WP_136365375.1 | 2568653 | g21117 | i0 | 59.3 | 1 | 81 | 33 | 100 | 0 | 1 | 243 | 225 | 305 | WP_136365375.1 sensor histidine kinase [Deinococcus sp. Arct2-2] | diamond | 243 | 98.6 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus sp. Arct2-2 | ||
| 23798096 | 23798096 | PRJNA859990_S_NODE_19199_length_247_cov_2.413793_g18938_i0 | PRJNA859990 | 19199 | 247 | 2.413793 | 5.96206871 | Deinococcota bacterium DY0809b | 3396280 | Bacteria | Bacteria | 204 | 5.819999999999998e-48 | NTclustered | gi|2904223141|gb|CP179936.1| | 3396280 | g18938 | i0 | 86.957 | 95.2955465587045 | 184 | 20 | 74 | 4 | 66 | 247 | 2006572 | 2006391 | Deinococcota bacterium DY0809b chromosome, complete genome | blastn | 23538 | 204 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococcota bacterium DY0809b |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;