RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA859990", tax_phylum = "Cossaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Cossaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA859990 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
845772 845772 PRJNA859990_S_NODE_11181_length_306_cov_1.163090_g10920_i0 PRJNA859990 11181 306 1.16309 3.5590554 Alphapapillomavirus 2 337039 Viruses Viruses 555 1.7799999999999996e-153   NTclustered gi|397005|emb|X74462.1| 10614 g10920 i0 99.346 6.86601307189542 306 2 100 0 1 306 563 258 Human papillomavirus type 3 genomic DNA blastn 2101 555 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
14873857 14873857 PRJNA859990_S_NODE_18432_length_249_cov_2.312500_g18171_i0 PRJNA859990 18432 249 2.3125 5.758125 Betapapillomavirus 2 333924 Viruses Viruses 449 6.840000000000001e-122   NTclustered gi|1150189779|gb|KY242583.1| 1961924 g18171 i0 99.197 1.99196787148594 249 2 100 0 1 249 4853 4605 Human papillomavirus type 209 isolate FA108, complete genome blastn 496 449 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;