contig_metadata
12 rows where bioproject = "PRJNA859990", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5949224 | 5949224 | PRJNA859990_S_NODE_19865_length_246_cov_0.890173_g19604_i0 | PRJNA859990 | 19865 | 246 | 0.890173 | 2.18982558 | Peredibacter starrii | 28202 | Bacteria | Bacteria | 353 | 5.44e-93 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g19604 | i0 | 92.653 | 3.99186991869919 | 245 | 18 | 99 | 0 | 2 | 246 | 512231 | 512475 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 982 | 353 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 9774077 | 9774077 | PRJNA859990_S_NODE_9128_length_334_cov_1.394636_g8867_i0 | PRJNA859990 | 9128 | 334 | 1.394636 | 4.65808424 | Peredibacter starrii | 28202 | Bacteria | Bacteria | 595 | 1.1599999999999998e-165 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g8867 | i0 | 98.802 | 204.245508982036 | 334 | 4 | 100 | 0 | 1 | 334 | 513055 | 512722 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 68218 | 595 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 12325154 | 12325154 | PRJNA859990_S_NODE_5750_length_410_cov_1.317507_g5489_i0 | PRJNA859990 | 5750 | 410 | 1.317507 | 5.4017787 | Peredibacter starrii | 28202 | Bacteria | Bacteria | 721 | 0 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g5489 | i0 | 98.301 | 115.956097560976 | 412 | 5 | 100 | 1 | 1 | 410 | 511821 | 512232 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 47542 | 721 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 14873842 | 14873842 | PRJNA859990_S_NODE_16752_length_257_cov_1.434783_g16491_i0 | PRJNA859990 | 16752 | 257 | 1.434783 | 3.68739231 | Peredibacter starrii | 28202 | Bacteria | Bacteria | 414 | 2.59e-111 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g16491 | i0 | 96.063 | 91.9455252918288 | 254 | 10 | 99 | 0 | 4 | 257 | 511302 | 511049 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 23630 | 414 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 14873893 | 14873893 | PRJNA859990_S_NODE_21492_length_242_cov_1.621302_g21231_i0 | PRJNA859990 | 21492 | 242 | 1.621302 | 3.92355084 | Bdellovibrio sp. HAGR004 | 3113895 | Bacteria | Bacteria | 243 | 1.2100000000000004e-59 | NTclustered | gi|2663432256|dbj|AP029176.1| | 3113895 | g21231 | i0 | 88.5 | 2.73140495867769 | 200 | 23 | 83 | 0 | 3 | 202 | 2579000 | 2579199 | Bdellovibrio sp. HAGR004 DNA, complete genome | blastn | 661 | 243 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. HAGR004 | ||
| 20362586 | 20362586 | PRJNA859990_S_NODE_6016_length_401_cov_1.945122_g5755_i0 | PRJNA859990 | 6016 | 401 | 1.945122 | 7.79993922 | Peredibacter | 263370 | Bacteria | Bacteria | 667 | 0 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g5755 | i0 | 96.758 | 219.476309226933 | 401 | 12 | 100 | 1 | 1 | 401 | 511581 | 511980 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 88010 | 667 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 27149495 | 27149495 | PRJNA859990_S_NODE_18242_length_250_cov_0.870056_g17981_i0 | PRJNA859990 | 18242 | 250 | 0.870056 | 2.17514 | Bacteriovoracaceae bacterium | 2081706 | Bacteria | Bacteria | 145 | 4.55e-39 | NR | MCM2350652.1 | 2081706 | g17981 | i0 | 79.5 | 0.996 | 83 | 17 | 99.6 | 0 | 2 | 250 | 457 | 539 | MCM2350652.1 hypothetical protein [Bacteriovoracaceae bacterium] | diamond | 249 | 145 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovoracaceae bacterium | |||
| 27907656 | 27907656 | PRJNA859990_S_NODE_19525_length_247_cov_0.879310_g19264_i0 | PRJNA859990 | 19525 | 247 | 0.87931 | 2.1718957 | Bacteriovoracaceae bacterium | 2081706 | Bacteria | Bacteria | 62 | 6.18e-9 | NR | MBY0515591.1 | 2081706 | g19264 | i0 | 37.3 | 1.0080971659919 | 83 | 50 | 98.4 | 2 | 3 | 245 | 546 | 628 | MBY0515591.1 hypothetical protein [Bacteriovoracaceae bacterium] | diamond | 249 | 62 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovoracaceae bacterium | |||
| 28034387 | 28034387 | PRJNA859990_S_NODE_20525_length_244_cov_1.543860_g20264_i0 | PRJNA859990 | 20525 | 244 | 1.54386 | 3.7670184 | Bdellovibrio sp. KM | 28201 | Bacteria | Bacteria | 74.7 | 2.11e-13 | NR | WP_181604689.1 | 2748865 | g20264 | i0 | 97.1 | 0.418032786885246 | 34 | 1 | 41.8 | 0 | 244 | 143 | 950 | 983 | WP_181604689.1 L-glutamate gamma-semialdehyde dehydrogenase [Bdellovibrio sp. KM01] | diamond | 102 | 74.7 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. KM01 | ||
| 30244819 | 30244819 | PRJNA859990_S_NODE_21692_length_242_cov_0.911243_g21431_i0 | PRJNA859990 | 21692 | 242 | 0.911243 | 2.20520806 | Pseudobdellovibrio sp. | 2862747 | Bacteria | Bacteria | 62.8 | 3.15e-9 | NR | MFN3453399.1 | 2862747 | g21431 | i0 | 42.3 | 0.966942148760331 | 78 | 45 | 96.7 | 0 | 242 | 9 | 444 | 521 | MFN3453399.1 aromatic amino acid hydroxylase [Pseudobdellovibrio sp.] | diamond | 234 | 62.8 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio sp. | ||
| 30434590 | 30434590 | PRJNA859990_S_NODE_18213_length_250_cov_0.915254_g17952_i0 | PRJNA859990 | 18213 | 250 | 0.915254 | 2.288135 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 87 | 3e-18 | NR | HVK60334.1 | 2053517 | g17952 | i0 | 64.2 | 0.804 | 67 | 24 | 80.4 | 0 | 1 | 201 | 56 | 122 | HVK60334.1 hypothetical protein [Bdellovibrionales bacterium] | diamond | 201 | 87 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 31445566 | 31445566 | PRJNA859990_S_NODE_18276_length_250_cov_0.870056_g18015_i0 | PRJNA859990 | 18276 | 250 | 0.870056 | 2.17514 | Silvanigrellaceae bacterium | 2654442 | Bacteria | Bacteria | 64.7 | 7.05e-10 | NR | MBX9837929.1 | 2654442 | g18015 | i0 | 50.8 | 0.732 | 61 | 29 | 73.2 | 1 | 248 | 66 | 96 | 155 | MBX9837929.1 hypothetical protein [Silvanigrellaceae bacterium] | diamond | 183 | 64.7 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Oligoflexia | Silvanigrellales | Silvanigrellaceae | Silvanigrellaceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;