RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA859990", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 4 ✖

tax_kingdom 1

  • Viridiplantae · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA859990 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4674367 4674367 PRJNA859990_S_NODE_21684_length_242_cov_0.911243_g21423_i0 PRJNA859990 21684 242 0.911243 2.20520806 Desmochloris halophila 138176 Plants Plants 303 5.45e-78   NTclustered gi|371782123|emb|HE610155.1| 138176 g21423 i0 89.431 73.2603305785124 246 18 100 6 1 242 3200 2959 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 17729 303 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
5064066 5064066 PRJNA859990_S_NODE_12404_length_293_cov_1.172727_g12143_i0 PRJNA859990 12404 293 1.172727 3.43609011 root 1 Root_unresolved Root_unresolved 525 1.3299999999999994e-144   NTclustered gi|1992615818|gb|MW648643.1| 37433 g12143 i0 98.976 100.167235494881 293 3 100 0 1 293 16 308 Stichococcus bacillaris strain TCC145-1-sq1 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 29349 525 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
8498873 8498873 PRJNA859990_S_NODE_4327_length_462_cov_1.732648_g4067_i0 PRJNA859990 4327 462 1.732648 8.00483376 Prasiola crispa 173492 Plants Plants 640 7.529999999999999e-179   NTclustered gi|806639636|gb|KR017749.1| 173492 g4067 i0 91.793 138.162337662338 463 32 100 5 1 462 2624 3081 Prasiola crispa clone Contig2 chloroplast sequence blastn 63831 640 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Prasiola Prasiola crispa
20362464 20362464 PRJNA859990_S_NODE_17076_length_255_cov_1.302198_g16815_i0 PRJNA859990 17076 255 1.302198 3.3206049 Desmochloris 138596 Plants Plants 444 3.27e-120   NTclustered gi|313476264|emb|FM882217.1| 578869 g16815 i0 98.039 99.9843137254902 255 5 100 0 1 255 301 47 Desmochloris sp. TP-2008 partial 18S rRNA gene, ITS1, 5.8S rRNA and ITS2, strain CCAP 6006/2 blastn 25496 444 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris mollenhaueri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;