RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA859990", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA859990 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19972493 19972493 PRJNA859990_S_NODE_21516_length_242_cov_1.467456_g21255_i0 PRJNA859990 21516 242 1.467456 3.55124352 Candidatus Solibacter usitatus 332163 Bacteria Bacteria 355 1.48e-93   NTclustered gi|470468228|ref|NR_076103.1| 332163 g21255 i0 93.697 67.2768595041322 238 14 98 1 3 239 1543 1306 Candidatus Solibacter usitatus strain Ellin6076 23S ribosomal RNA gene, complete sequence blastn 16281 355 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter usitatus
21248021 21248021 PRJNA859990_S_NODE_19777_length_246_cov_1.005780_g19516_i0 PRJNA859990 19777 246 1.00578 2.4742188 Acidobacteriota bacterium 1978231 Bacteria Bacteria 250 7.34e-62   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g19516 i0 85.957 187.626016260163 235 32 95 1 3 236 3298496 3298262 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 46156 250 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30466140 30466140 PRJNA859990_S_NODE_19793_length_246_cov_0.890173_g19532_i0 PRJNA859990 19793 246 0.890173 2.18982558 Blastocatellia bacterium 2052146 Bacteria Bacteria 84.7 3.97e-17   NR HJQ22953.1 2052146 g19532 i0 53.1 0.98780487804878 81 36 98.8 1 246 4 243 321 HJQ22953.1 kelch repeat-containing protein [Blastocatellia bacterium] diamond 243 84.7 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
30623634 30623634 PRJNA859990_S_NODE_14153_length_277_cov_1.970588_g13892_i0 PRJNA859990 14153 277 1.970588 5.45852876 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 111 2.09e-26   NR HEY0458155.1 2283092 g13892 i0 93 1.85198555956679 57 4 61.7 0 275 105 414 470 HEY0458155.1 amidohydrolase family protein [Pyrinomonadaceae bacterium] diamond 513 111 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30655321 30655321 PRJNA859990_S_NODE_19013_length_248_cov_0.880000_g18752_i0 PRJNA859990 19013 248 0.88 2.1824 Acidobacteriota bacterium 1978231 Bacteria Bacteria 145 6.8e-40   NR MCA1613443.1 1978231 g18752 i0 87.8 3.96774193548387 82 10 99.2 0 3 248 113 194 MCA1613443.1 IS256 family transposase [Acidobacteriota bacterium] diamond 984 145 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31382415 31382415 PRJNA859990_S_NODE_22816_length_233_cov_2.031250_g22555_i0 PRJNA859990 22816 233 2.03125 4.7328125 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 85.5 2.76e-17   NR HEY8560689.1 2283092 g22555 i0 85.4 0.618025751072961 48 7 61.8 0 145 2 1 48 HEY8560689.1 L-glutamate gamma-semialdehyde dehydrogenase [Pyrinomonadaceae bacterium] diamond 144 85.5 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;