RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA859990", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA859990 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12715662 12715662 PRJNA859990_S_NODE_20490_length_244_cov_1.853801_g20229_i0 PRJNA859990 20490 244 1.853801 4.52327444 Spiroplasma 2132 Bacteria Bacteria 172 1.62e-38   NTclustered gi|2208027045|gb|CP093047.1| 2138 g20229 i0 79.839 87.2581967213115 248 41 100 9 1 244 349001 348759 Spiroplasma poulsonii strain sHy chromosome, complete genome blastn 21291 172 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma poulsonii
17813494 17813494 PRJNA859990_S_NODE_13614_length_282_cov_0.942584_g13353_i0 PRJNA859990 13614 282 0.942584 2.65808688 Mesomycoplasma 2923352 Bacteria Bacteria 505 1.6599999999999995e-138   NTclustered gi|1720621726|gb|CP035041.1| 2100 g13353 i0 98.936 15.8723404255319 282 3 100 0 1 282 644056 643775 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 4476 505 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;