RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA859990" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Sar · 10 ✖

bioproject 1

  • PRJNA859990 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
845950 845950 PRJNA859990_S_NODE_6561_length_387_cov_1.203822_g6300_i0 PRJNA859990 6561 387 1.203822 4.65879114 Isotricha sp. 1917196 SAR_Eukaryotes SAR_Eukaryotes 560 4.97e-155   NTclustered gi|2643596952|gb|PP067624.1| 1917196 g6300 i0 98.131 150.868217054264 321 6 83 0 1 321 3418 3738 Isotricha sp. isolate 03.MDA04 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 58386 560 1 Eukaryota Sar   Ciliophora Litostomatea Vestibuliferida Isotrichidae Isotricha Isotricha sp.
5949290 5949290 PRJNA859990_S_NODE_5465_length_419_cov_1.355491_g5204_i0 PRJNA859990 5465 419 1.355491 5.67950729 Polyplastron multivesiculatum 47894 SAR_Eukaryotes SAR_Eukaryotes 741 0   NTclustered gi|2643596968|gb|PP067640.1| 47894 g5204 i0 98.568 96.7350835322196 419 6 100 0 1 419 2040 2458 Polyplastron multivesiculatum isolate 03.MDA01 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 40532 741 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Polyplastron Polyplastron multivesiculatum
7224054 7224054 PRJNA859990_S_NODE_16386_length_259_cov_2.118280_g16125_i0 PRJNA859990 16386 259 2.11828 5.4863452 Isotricha prostoma 5987 SAR_Eukaryotes SAR_Eukaryotes 440 4.309999999999998e-119   NTclustered gi|2643596954|gb|PP067626.1| 5987 g16125 i0 97.665 92.2857142857143 257 4 99 2 4 259 2439 2184 Isotricha prostoma isolate 03.MDA03 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 23902 440 1 Eukaryota Sar   Ciliophora Litostomatea Vestibuliferida Isotrichidae Isotricha Isotricha prostoma
11439874 11439874 PRJNA859990_S_NODE_18529_length_249_cov_1.170455_g18268_i0 PRJNA859990 18529 249 1.170455 2.91443295 Entodinium 40635 SAR_Eukaryotes SAR_Eukaryotes 427 3.2e-115   NTclustered gi|1102610265|gb|KY111856.1| 40636 g18268 i0 97.59 99.9919678714859 249 6 100 0 1 249 57 305 Entodinium sp. isolate B2 small subunit ribosomal RNA gene, partial sequence blastn 24898 427 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Entodinium Entodinium sp.
13599571 13599571 PRJNA859990_S_NODE_17791_length_251_cov_1.286517_g17530_i0 PRJNA859990 17791 251 1.286517 3.22915767 Polyplastron multivesiculatum 47894 SAR_Eukaryotes SAR_Eukaryotes 442 1.1599999999999995e-119   NTclustered gi|2643596968|gb|PP067640.1| 47894 g17530 i0 99.184 71.8286852589641 245 2 98 0 1 245 3879 4123 Polyplastron multivesiculatum isolate 03.MDA01 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 18029 442 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Polyplastron Polyplastron multivesiculatum
14874007 14874007 PRJNA859990_S_NODE_8972_length_336_cov_2.456274_g8711_i0 PRJNA859990 8972 336 2.456274 8.25308064 Diplophrys mutabilis 1407010 SAR_Eukaryotes SAR_Eukaryotes 370 7.700000000000001e-98   NTclustered gi|550533550|dbj|AB856527.1| 1407010 g8711 i0 86.782 26.0625 348 26 98 14 7 336 1074 729 Diplophrys mutabilis gene for 18S ribosomal RNA, partial sequence blastn 8757 370 1 Eukaryota Sar     Bigyra Amphitremida   Diplophrys Diplophrys mutabilis
19087503 19087503 PRJNA859990_S_NODE_12575_length_291_cov_2.155963_g12314_i0 PRJNA859990 12575 291 2.155963 6.27385233 Poterioochromonas 88166 SAR_Eukaryotes SAR_Eukaryotes 289 1.8899999999999996e-73   NTclustered gi|323690576|gb|GU935635.1| 88167 g12314 i0 100 52.9415807560137 156 0 54 0 70 225 1599 1754 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 15406 289 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
21638142 21638142 PRJNA859990_S_NODE_17777_length_251_cov_1.331461_g17516_i0 PRJNA859990 17777 251 1.331461 3.34196711 root 1 Root_unresolved Root_unresolved 363 9.249999999999997e-96   NTclustered gi|166044540|emb|CU367449.1| 100861 g17516 i0 97.209 13.2868525896414 215 5 85 1 38 251 333 119 Aphanomyces euteiches cDNA blastn 3335 363 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25462711 25462711 PRJNA859990_S_NODE_15080_length_269_cov_1.561224_g14819_i0 PRJNA859990 15080 269 1.561224 4.19969256 Entodinium 40635 SAR_Eukaryotes SAR_Eukaryotes 484 2.0499999999999994e-132   NTclustered gi|2643596937|gb|PP067609.1| 47911 g14819 i0 99.254 99.631970260223 268 2 99 0 1 268 583 850 Entodinium caudatum isolate SAG3_0_NT_6493 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 26801 484 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Entodinium Entodinium caudatum
29076342 29076342 PRJNA859990_S_NODE_18288_length_250_cov_0.870056_g18027_i0 PRJNA859990 18288 250 0.870056 2.17514 Pelagomonas calceolata 35677 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00403   NR CAH0373016.1 35677 g18027 i0 46.3 0.648 54 28 63.6 1 205 47 96 149 CAH0373016.1 unnamed protein product [Pelagomonas calceolata] diamond 162 45.4 1 Eukaryota Sar     Pelagophyceae Pelagomonadales Pelagomonadaceae Pelagomonas Pelagomonas calceolata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;