RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA859990", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 7 ✖

bioproject 1

  • PRJNA859990 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2121191 2121191 PRJNA859990_S_NODE_10302_length_317_cov_0.872951_g10041_i0 PRJNA859990 10302 317 0.872951 2.76725467 Oscheius dolichura 473156 Nematoda Nematoda 568 2.3799999999999994e-157   NTclustered gi|2211271301|emb|OW051498.1| 473156 g10041 i0 99.054 102.425867507886 317 2 100 1 1 317 6310 6625 Oscheius dolichura genome assembly, organelle: mitochondrion blastn 32469 568 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius dolichura
8889142 8889142 PRJNA859990_S_NODE_23767_length_210_cov_4.226277_g23506_i0 PRJNA859990 23767 210 4.226277 8.8751817 Oscheius 42476 Nematoda Nematoda 372 1.25e-98   NTclustered gi|8515034|gb|AF082995.1| 96769 g23506 i0 98.571 98.6142857142857 210 3 100 0 1 210 1571 1362 Oscheius sp. DF5000 18S ribosomal RNA gene, partial sequence blastn 20709 372 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius sp. DF5000
9774046 9774046 PRJNA859990_S_NODE_648_length_1016_cov_29.178155_g475_i0 PRJNA859990 648 1016 29.178155 296.4500548 Oscheius dolichura 473156 Nematoda Nematoda 1877 0   NTclustered gi|300379479|gb|HM355818.1| 473156 g475 i0 100 99.2204724409449 1016 0 100 0 1 1016 4912 3897 Oscheius dolichura isolate PS330 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 100808 1877 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius dolichura
11049676 11049676 PRJNA859990_S_NODE_949_length_868_cov_22.525786_g746_i0 PRJNA859990 949 868 22.525786 195.52382248 Oscheius dolichura 473156 Nematoda Nematoda 1576 0   NTclustered gi|300379472|gb|HM355811.1| 473156 g746 i0 99.424 68.3513824884793 868 5 100 0 1 868 3502 2635 Oscheius dolichura isolate LDY30 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 59329 1576 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius dolichura
21247931 21247931 PRJNA859990_S_NODE_12137_length_295_cov_11.878378_g11876_i0 PRJNA859990 12137 295 11.878378 35.0412151 Oscheius dolichura 473156 Nematoda Nematoda 531 2.879999999999999e-146   NTclustered gi|158821907|gb|EU195971.1| 473156 g11876 i0 99.317 49.3152542372881 293 2 99 0 3 295 3091 3383 Oscheius dolichura strain JU460 28S ribosomal RNA gene, partial sequence blastn 14548 531 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius dolichura
21248054 21248054 PRJNA859990_S_NODE_22757_length_233_cov_23.937500_g22496_i0 PRJNA859990 22757 233 23.9375 55.774375 Oscheius dolichura 473156 Nematoda Nematoda 414 2.3099999999999998e-111   NTclustered gi|158821907|gb|EU195971.1| 473156 g22496 i0 98.712 100.793991416309 233 3 100 0 1 233 2430 2662 Oscheius dolichura strain JU460 28S ribosomal RNA gene, partial sequence blastn 23485 414 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius dolichura
25072133 25072133 PRJNA859990_S_NODE_6800_length_380_cov_15.967427_g6539_i0 PRJNA859990 6800 380 15.967427 60.6762226 Oscheius sp. DF5000 96769 Nematoda Nematoda 680 0   NTclustered gi|8515034|gb|AF082995.1| 96769 g6539 i0 98.947 86.1473684210526 380 4 100 0 1 380 24 403 Oscheius sp. DF5000 18S ribosomal RNA gene, partial sequence blastn 32736 680 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius sp. DF5000

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;