RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA859990", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA859990 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4674470 4674470 PRJNA859990_S_NODE_9184_length_333_cov_1.688462_g8923_i0 PRJNA859990 9184 333 1.688462 5.62257846 Entamoeba histolytica 5759 Evosea other_Eukaryota 182 3.84e-41   NTclustered gi|415339|emb|X65163.1| 5759 g8923 i0 91.111 202.627627627628 135 10 40 2 134 267 6205 6072 E.histolytica rRNA blastn 67475 182 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
7614078 7614078 PRJNA859990_S_NODE_16106_length_261_cov_1.446809_g15845_i0 PRJNA859990 16106 261 1.446809 3.77617149 root 1 Root_unresolved Root_unresolved 472 1.54e-128   NTclustered gi|1057487664|gb|KX539393.1| 133408 g15845 i0 99.234 99.6360153256705 261 2 100 0 1 261 716 456 Acytostelium leptosomum strain FG12A RNA polymerase I (rpa1) gene, partial cds blastn 26005 472 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;